Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 1.7e-35 152.1 79 100.0
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 1.2e-23 112.8 79 79.7
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 1.6e-17 92.4 81 63.0
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 4.0e-16 87.8 80 58.8
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.0e-16 87.8 80 58.8
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.0e-16 87.8 80 58.8
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 4.5e-15 84.3 80 60.0
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 5.8e-15 84.0 80 58.8
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 9.9e-15 83.2 80 56.2
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.1e-13 79.7 80 56.2
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.1e-13 79.7 80 55.0
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.9e-13 79.0 80 53.8
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 4.2e-13 77.8 80 55.0
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.4e-13 77.4 80 53.8
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 5.4e-13 77.4 68 66.2
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 5.4e-13 77.4 80 55.0
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 7.1e-13 77.0 80 53.8
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 7.1e-13 77.0 80 53.8
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 9.3e-13 76.6 80 55.0
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 1.2e-12 76.3 80 53.8
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 1.6e-12 75.9 80 52.5
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.1e-12 75.5 80 53.8
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 3.5e-12 74.7 80 52.5
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.6e-12 74.3 80 52.5
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 6.0e-12 73.9 80 53.8
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 7.9e-12 73.6 78 53.8
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 7.9e-12 73.6 82 52.4
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.3e-11 72.8 80 51.2
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 3.0e-11 71.6 80 51.2
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 6.7e-11 70.5 80 51.2
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 1.9e-10 68.9 80 48.8
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.9e-10 68.9 80 50.0
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 2.5e-10 68.6 78 51.3
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 2.5e-10 68.6 78 51.3
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 3.3e-10 68.2 78 50.0
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 4.3e-10 67.8 80 47.5
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 5.6e-10 67.4 79 45.6
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 7.4e-10 67.0 82 53.7
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 9.6e-10 66.6 80 45.0
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 9.6e-10 66.6 80 45.0
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 9.6e-10 66.6 84 52.4
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 9.6e-10 66.6 82 50.0
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 1.3e-09 66.2 80 46.2
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 1.3e-09 66.2 80 45.0
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 1.6e-09 65.9 85 50.6
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 4.8e-09 64.3 79 44.3
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 6.2e-09 63.9 80 48.8
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 6.2e-09 63.9 80 48.8
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 6.2e-09 63.9 79 48.1
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 8.1e-09 63.5 103 38.8
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 8.1e-09 63.5 82 47.6
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 1.1e-08 63.2 81 46.9
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 2.4e-08 62.0 80 48.8
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.4e-08 62.0 79 46.8
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 2.4e-08 62.0 81 48.1
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 3.1e-08 61.6 81 48.1
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 3.1e-08 61.6 81 48.1
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 5.3e-08 60.8 84 46.4
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 5.3e-08 60.8 79 44.3
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 5.3e-08 60.8 79 46.8
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 5.3e-08 60.8 79 46.8
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 9.0e-08 60.1 75 46.7
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 1.2e-07 59.7 79 46.8
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 1.5e-07 59.3 85 49.4
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 2.6e-07 58.5 73 50.7
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 3.4e-07 58.2 79 44.3
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 4.5e-07 57.8 82 45.1
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 4.5e-07 57.8 82 45.1
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 4.5e-07 57.8 72 45.8
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 5.8e-07 57.4 79 45.6
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 5.8e-07 57.4 80 47.5
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 7.6e-07 57.0 84 44.0
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 1.3e-06 56.2 85 41.2
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.3e-06 56.2 79 43.0
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.7e-06 55.8 63 55.6
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.7e-06 55.8 56 55.4
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 8.4e-06 53.5 40 62.5


User provided reference genes

Program Settings