Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1369.8 691 100.0
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1147.9 722 83.4
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 3.1e-298 1028.1 722 75.3
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 5.2e-285 984.2 705 73.9
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.1e-277 958.4 705 72.2
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 2.6e-276 955.3 705 72.2
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.1e-274 949.9 707 71.6
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.2e-274 948.3 707 71.4
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 9.5e-263 910.2 712 67.4
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 1.1e-258 896.7 717 66.1
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 4.6e-257 891.3 715 64.6
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 1.7e-256 889.4 712 65.3
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 2.4e-253 879.0 712 64.9
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 3.4e-252 875.2 796 60.2
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 1.3e-251 873.2 710 64.8
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 7.8e-249 864.0 712 63.1
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.3e-248 862.4 712 62.8
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 6.6e-248 860.9 710 63.9
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 1.5e-247 859.8 712 63.9
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.6e-246 855.1 710 63.5
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.4e-245 853.2 713 64.4
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 9.0e-245 850.5 710 63.4
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 6.2e-238 827.8 745 59.1
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 4.0e-237 825.1 738 59.9
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 4.5e-236 821.6 710 61.7
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 9.3e-234 813.9 796 55.4
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 9.3e-234 813.9 710 59.2
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 3.5e-233 812.0 721 58.5
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 4.6e-233 811.6 721 58.5
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 1.3e-230 803.5 712 59.6
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 1.8e-229 799.7 704 60.5
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 2.2e-227 792.7 702 60.3
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 2.9e-227 792.3 712 58.4
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 3.8e-227 792.0 710 58.3
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 1.4e-226 790.0 710 58.6
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 4.2e-226 788.5 711 58.4
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 1.6e-225 786.6 711 58.5
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 2.1e-225 786.2 728 58.1
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 1.0e-224 783.9 710 57.7
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 1.8e-224 783.1 712 57.9
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 2.3e-224 782.7 704 58.9
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 3.0e-224 782.3 712 57.7
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 1.3e-222 776.9 717 56.8
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 8.2e-222 774.2 713 57.1
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 1.4e-221 773.5 710 57.5
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 1.4e-221 773.5 710 57.6
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 1.8e-221 773.1 713 57.1
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 6.9e-221 771.2 710 56.6
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 3.4e-220 768.8 710 57.3
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 1.3e-219 766.9 717 57.2
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 2.2e-219 766.1 720 56.9
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 5.0e-219 765.0 717 57.0
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 8.5e-219 764.2 709 57.8
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 1.1e-218 763.8 720 56.8
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 1.1e-218 763.8 712 56.7
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 1.9e-218 763.1 692 58.8
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 4.2e-218 761.9 710 56.5
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 1.1e-215 753.8 670 58.7
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 1.1e-215 753.8 710 56.9
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 2.8e-214 749.2 710 55.6
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 4.1e-213 745.3 682 57.8
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 6.9e-213 744.6 711 56.4
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 7.7e-212 741.1 710 55.9
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 2.5e-210 736.1 770 54.2
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 4.7e-209 731.9 793 52.0
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 4.7e-209 731.9 793 52.0
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 2.8e-206 722.6 659 58.9
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 9.1e-205 717.6 852 48.0
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 1.5e-204 716.8 693 56.3
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 3.4e-204 715.7 786 50.9
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 1.9e-202 709.9 712 53.7
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 7.2e-202 708.0 728 52.9
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 8.0e-201 704.5 724 52.9
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.4e-197 693.7 727 52.4
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 2.7e-193 679.5 805 48.1
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 5.5e-186 655.2 739 49.8
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.3e-179 634.0 592 55.9
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 2.6e-175 619.8 699 48.8
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 2.0e-159 567.0 385 74.8
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 9.2e-157 558.1 727 44.3
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 6.6e-155 552.0 670 48.1
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 3.1e-152 543.1 355 73.8
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 5.4e-141 505.8 520 50.0
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 9.2e-141 505.0 693 44.6
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 7.3e-130 468.8 712 36.7
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.6e-129 466.5 652 42.2
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 1.2e-124 451.4 287 78.0
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 1.1e-117 428.3 288 70.1
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.1e-109 401.7 730 33.4
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.6e-108 397.9 720 33.2
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 2.5e-106 390.6 405 55.1
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 4.2e-101 373.2 751 32.1
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 9.7e-98 362.1 297 60.3
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 1.3e-94 351.7 327 60.6
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 2.6e-82 310.8 342 51.2
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 8.2e-81 305.8 215 69.3
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.2e-77 293.5 201 71.1
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 1.5e-61 241.9 311 50.8
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 9.8e-58 229.2 171 68.4
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.6e-52 210.7 184 61.4
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 2.3e-46 191.4 496 27.6
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.3e-38 165.6 105 74.3
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.9e-38 164.1 219 44.3
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.6e-36 158.7 169 55.0
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.9e-32 145.2 251 38.2
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 5.2e-27 127.1 92 64.1
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 3.0e-22 111.3 146 49.3
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.8e-19 102.1 152 42.1
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.8e-19 102.1 166 42.2
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 6.4e-17 93.6 71 59.2
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 2.1e-15 88.6 75 54.7
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.7e-14 85.5 58 62.1
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 2.3e-14 85.1 51 70.6
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 9.6e-13 79.7 152 39.5
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.8e-12 78.2 70 61.4
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 1.5e-10 72.4 57 56.1
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.7e-09 68.9 42 71.4
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 8.4e-09 66.6 105 35.2
AT4G10843 Arabidopsis thaliana HOM05D004110 ORTHO05D038727 5.4e-08 63.9 99 39.4
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 5.4e-08 63.9 117 35.9
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 2.1e-07 62.0 218 28.9
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 4.6e-07 60.8 55 54.5
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 6.0e-07 60.5 57 54.4


User provided reference genes

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