Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 7.7e-93 344.0 195 100.0
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 3.0e-60 235.7 173 81.5
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 3.1e-57 225.7 173 81.5
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 5.8e-56 221.5 174 77.0
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 3.6e-50 202.2 177 74.0
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.1e-49 200.7 176 73.3
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.8e-49 199.9 175 73.7
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.4e-48 195.7 177 72.3
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.8e-48 194.9 175 72.0
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.4e-30 137.1 178 60.7
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 6.0e-29 131.7 175 60.0
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.7e-28 130.2 172 59.9
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 8.7e-28 127.9 178 59.0
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 2.5e-27 126.3 173 59.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 9.6e-27 124.4 175 54.9
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 2.1e-26 123.2 178 54.5
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.8e-26 122.9 175 56.0
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.8e-26 122.9 175 54.3
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.8e-26 122.1 140 63.6
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.8e-26 122.1 175 57.7
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.4e-25 120.6 170 55.9
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 4.0e-25 119.0 172 54.1
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 4.0e-25 119.0 141 52.5
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 5.3e-25 118.6 176 56.8
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.5e-24 117.1 173 56.6
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 2.0e-24 116.7 178 53.4
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 2.0e-24 116.7 179 55.3
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.0e-24 116.7 176 55.1
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.4e-24 115.9 180 52.2
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 3.4e-24 115.9 161 55.3
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 9.9e-24 114.4 157 50.3
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.3e-23 114.0 168 53.6
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 3.8e-23 112.5 176 51.1
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 6.4e-23 111.7 178 48.9
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.1e-22 110.9 174 50.6
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.1e-22 110.9 162 52.5
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.9e-22 110.2 176 51.7
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.4e-22 109.8 175 47.4
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 4.2e-22 109.0 161 57.1
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 4.2e-22 109.0 174 52.3
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 4.2e-22 109.0 171 52.0
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.2e-21 107.5 173 53.8
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.2e-21 107.5 182 46.2
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 2.1e-21 106.7 161 51.6
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 2.7e-21 106.3 182 47.8
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.7e-21 106.3 172 46.5
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 3.5e-21 105.9 167 55.7
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 4.6e-21 105.5 169 51.5
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 4.6e-21 105.5 147 55.1
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 7.9e-21 104.8 126 65.1
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 1.8e-20 103.6 180 52.2
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 1.8e-20 103.6 169 51.5
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 3.0e-20 102.8 173 48.0
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 3.9e-20 102.4 125 64.0
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 3.9e-20 102.4 174 50.6
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 5.1e-20 102.1 188 49.5
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 6.7e-20 101.7 124 63.7
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 6.7e-20 101.7 126 61.9
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 1.5e-19 100.5 180 51.7
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.5e-19 100.5 180 51.7
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.5e-19 100.5 177 50.8
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 1.9e-19 100.1 178 51.7
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.9e-19 100.1 153 54.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 3.3e-19 99.4 127 63.0
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 4.3e-19 99.0 179 51.4
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 7.4e-19 98.2 58 86.2
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 1.3e-18 97.4 165 51.5
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 1.3e-18 97.4 153 52.3
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 6.2e-18 95.1 174 50.6
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 6.2e-18 95.1 67 77.6
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 8.1e-18 94.7 152 46.7
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 1.4e-17 94.0 87 63.2
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 1.4e-17 94.0 117 59.8
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.8e-17 93.6 124 50.8
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 3.1e-17 92.8 171 50.9
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 3.1e-17 92.8 173 50.9
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 4.0e-17 92.4 141 53.9
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 9.0e-17 91.3 177 48.6
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 1.5e-16 90.5 124 56.5
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 1.5e-16 90.5 114 50.9
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 3.4e-16 89.4 113 50.4
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 5.8e-16 88.6 125 58.4
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 7.6e-16 88.2 128 43.8
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 9.9e-16 87.8 125 56.8
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.9e-15 86.3 68 67.6
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 3.8e-15 85.9 68 67.6
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 3.8e-15 85.9 67 68.7
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 4.9e-15 85.5 68 67.6
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.1e-14 84.3 171 48.0
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.4e-14 84.0 170 47.1
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 7.9e-13 78.2 57 61.4
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.1e-11 74.3 157 44.6
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 2.5e-11 73.2 150 48.7
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.5e-11 73.2 126 54.0
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 9.6e-11 71.2 57 68.4
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 2.1e-10 70.1 144 47.9
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 4.8e-10 68.9 58 63.8
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.4e-09 66.6 67 59.7
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 2.4e-09 66.6 68 55.9
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.4e-09 66.6 68 60.3
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.4e-09 66.6 103 57.3
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 2.4e-09 66.6 103 57.3
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.1e-09 66.2 68 58.8
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 5.3e-09 65.5 68 54.4
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 5.3e-09 65.5 68 54.4
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 5.3e-09 65.5 63 61.9
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 6.9e-09 65.1 67 55.2
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 6.9e-09 65.1 62 59.7
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 6.9e-09 65.1 68 57.4
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 9.0e-09 64.7 58 58.6
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 9.0e-09 64.7 96 56.2
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 9.0e-09 64.7 55 65.5
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 9.0e-09 64.7 59 57.6
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 1.2e-08 64.3 61 59.0
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.2e-08 64.3 62 59.7
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 1.2e-08 64.3 68 52.9
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 2.0e-08 63.5 96 56.2
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 2.6e-08 63.2 92 52.2
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.6e-08 63.2 68 51.5
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.6e-08 63.2 59 54.2
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 2.6e-08 63.2 62 58.1
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 3.4e-08 62.8 59 55.9
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 3.4e-08 62.8 59 55.9
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 4.5e-08 62.4 59 50.8
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 4.5e-08 62.4 59 54.2
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 4.5e-08 62.4 59 54.2
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 4.5e-08 62.4 117 40.2
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 5.8e-08 62.0 68 52.9
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 5.8e-08 62.0 62 54.8
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 7.6e-08 61.6 59 49.2
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 7.6e-08 61.6 114 39.5
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.0e-07 61.2 68 50.0
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 1.0e-07 61.2 62 53.2
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.0e-07 61.2 62 53.2
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 1.0e-07 61.2 62 53.2
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.3e-07 60.8 59 49.2
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.7e-07 60.5 68 50.0
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.7e-07 60.5 68 50.0
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.7e-07 60.5 68 48.5
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 2.9e-07 59.7 163 35.0
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 3.8e-07 59.3 47 61.7
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.8e-07 59.3 151 35.8
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 6.5e-07 58.5 68 50.0
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 8.4e-07 58.2 68 45.6
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.1e-06 57.8 53 58.5
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.4e-06 57.4 68 47.1
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.5e-06 56.6 68 50.0
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 3.2e-06 56.2 62 53.2
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 3.2e-06 56.2 62 53.2
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 5.5e-06 55.5 68 51.5


User provided reference genes

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