Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1016100 Malus domestica HOM05D004566 ORTHO05D006041 5.2e-75 284.3 141 100.0
MD05G1016500 Malus domestica HOM05D004566 ORTHO05D006041 6.4e-73 277.3 140 96.4
Prupe.8G019800 Prunus persica HOM05D004566 ORTHO05D006041 1.0e-70 270.0 140 93.6
FAN15G1625 Fragaria x ananassa HOM05D004566 ORTHO05D006041 5.6e-69 264.2 138 93.5
FvH4_2g14590 Fragaria vesca HOM05D004566 ORTHO05D006041 7.3e-69 263.8 138 92.8
FAN27G2999 Fragaria x ananassa HOM05D004566 ORTHO05D006041 2.1e-68 262.3 138 92.0
QL09p046738 Quercus lobata HOM05D004566 ORTHO05D006041 2.1e-68 262.3 139 90.6
RcHm_v2.0_Chr6g0277061 Rosa chinensis HOM05D004566 ORTHO05D006041 3.6e-68 261.5 140 90.7
CiPaw.15G021200 Carya illinoinensis HOM05D004566 ORTHO05D006041 4.7e-68 261.2 139 89.9
Haze_17715 Corylus avellana HOM05D004566 ORTHO05D006041 4.7e-68 261.2 139 88.5
FAN24G3481 Fragaria x ananassa HOM05D004566 ORTHO05D006041 4.7e-68 261.2 138 92.0
FAN20G3136 Fragaria x ananassa HOM05D004566 ORTHO05D006041 8.1e-68 260.4 138 91.3
Eucgr.F02736 Eucalyptus grandis HOM05D004566 ORTHO05D006041 1.1e-67 260.0 136 92.6
GSVIVG01010038001 Vitis vinifera HOM05D004566 ORTHO05D006041 1.1e-67 260.0 139 89.2
CSS0027392 Camellia sinensis var. sinensis HOM05D004566 ORTHO05D006041 1.8e-67 259.2 139 89.2
QL02p025237 Quercus lobata HOM05D004566 ORTHO05D006041 1.8e-67 259.2 139 89.2
Cfa018360 Carpinus fangiana HOM05D004566 ORTHO05D006041 2.4e-67 258.8 139 88.5
Sabra05G0143600 Salix brachista HOM05D004566 ORTHO05D006041 2.4e-67 258.8 139 89.2
PGR042G0484 Punica granatum HOM05D004566 ORTHO05D006041 3.1e-67 258.5 139 87.8
arahy.Tifrunner.gnm1.ann1.FR9HZZ Arachis hypogaea HOM05D004566 ORTHO05D006041 5.2e-67 257.7 139 87.8
arahy.Tifrunner.gnm1.ann1.WMJ7PV Arachis hypogaea HOM05D004566 ORTHO05D006041 5.2e-67 257.7 139 87.8
Thecc.08G145200 Theobroma cacao HOM05D004566 ORTHO05D006041 5.2e-67 257.7 139 87.8
Ciclev10000721m.g Citrus clementina HOM05D004566 ORTHO05D006041 6.9e-67 257.3 139 89.2
Nn5g28636 Nelumbo nucifera HOM05D004566 ORTHO05D006041 6.9e-67 257.3 141 87.9
arahy.Tifrunner.gnm1.ann1.J7270J Arachis hypogaea HOM05D004566 ORTHO05D006041 8.9e-67 256.9 139 87.8
TAR381G1517 Trochodendron aralioides HOM05D004566 ORTHO05D006041 8.9e-67 256.9 141 89.4
Duzib093G0819 Durio zibethinus HOM05D004566 ORTHO05D006041 1.5e-66 256.1 139 86.3
ECA232G5048 Erigeron canadensis HOM05D004566 ORTHO05D006041 1.5e-66 256.1 139 88.5
Glyma.04G240400 Glycine max HOM05D004566 ORTHO05D006041 1.5e-66 256.1 139 87.8
Glyma.06G123000 Glycine max HOM05D004566 ORTHO05D006041 1.5e-66 256.1 139 87.8
Oeu014477.2 Olea europaea HOM05D004566 ORTHO05D006041 1.5e-66 256.1 140 86.4
Actinidia15158 Actinidia chinensis HOM05D004566 ORTHO05D006041 2.0e-66 255.8 139 87.8
Potri.005G188000 Populus trichocarpa HOM05D004566 ORTHO05D006041 2.6e-66 255.4 139 88.5
HanXRQChr09g0275251 Helianthus annuus HOM05D004566 ORTHO05D006041 3.4e-66 255.0 139 86.3
Lj1g0025718 Lotus japonicus HOM05D004566 ORTHO05D006041 3.4e-66 255.0 139 87.8
Medtr3g090170 Medicago truncatula HOM05D004566 ORTHO05D006041 7.6e-66 253.8 139 86.3
Manes.18G088000 Manihot esculenta HOM05D004566 ORTHO05D006041 9.9e-66 253.4 139 87.1
arahy.Tifrunner.gnm1.ann1.9SPN5G Arachis hypogaea HOM05D004566 ORTHO05D006041 1.3e-65 253.1 139 85.6
COL.COLO4_38311 Corchorus olitorius HOM05D004566 ORTHO05D006041 1.3e-65 253.1 139 86.3
Hma1.2p1_0107F.1_g051470 Hydrangea macrophylla HOM05D004566 ORTHO05D006041 1.7e-65 252.7 139 86.3
Peaxi162Scf00263g00417 Petunia axillaris HOM05D004566 ORTHO05D006041 1.7e-65 252.7 139 86.3
Phvul.009G135100 Phaseolus vulgaris HOM05D004566 ORTHO05D006041 1.7e-65 252.7 139 87.1
VMungo1309G3090 Vigna mungo HOM05D004566 ORTHO05D006041 1.7e-65 252.7 139 87.1
Cpa.g.sc49.59 Carica papaya HOM05D004566 ORTHO05D006041 2.2e-65 252.3 139 84.2
PSO017G6839 Papaver somniferum HOM05D004566 ORTHO05D006041 2.2e-65 252.3 136 86.0
TPR.G18763 Trifolium pratense HOM05D004566 ORTHO05D006041 2.2e-65 252.3 140 85.7
Nitab4.5_0000299g0160 Nicotiana tabacum HOM05D004566 ORTHO05D006041 2.9e-65 251.9 136 88.2
Nitab4.5_0010241g0020 Nicotiana tabacum HOM05D004566 ORTHO05D006041 2.9e-65 251.9 136 88.2
CiPaw.16G017400 Carya illinoinensis HOM05D004566 ORTHO05D006041 3.8e-65 251.5 140 87.9
ClCG08G006480 Citrullus lanatus HOM05D004566 ORTHO05D006041 3.8e-65 251.5 139 86.3
CANSAT25G2177 Cannabis sativa HOM05D004566 ORTHO05D006041 4.9e-65 251.1 139 85.6
Lalb_Chr23g0271371 Lupinus albus HOM05D004566 ORTHO05D006041 4.9e-65 251.1 139 84.9
Carub.0002s2403 Capsella rubella HOM05D004566 ORTHO05D006041 6.4e-65 250.8 137 86.9
Psat7g096680 Pisum sativum HOM05D004566 ORTHO05D006041 6.4e-65 250.8 139 86.3
Aqoxy6G02084 Aquilegia oxysepala HOM05D004566 ORTHO05D006041 8.4e-65 250.4 136 86.8
Duzib041G0052 Durio zibethinus HOM05D004566 ORTHO05D006041 8.4e-65 250.4 139 85.6
Lalb_Chr11g0066451 Lupinus albus HOM05D004566 ORTHO05D006041 8.4e-65 250.4 140 86.4
C02p34300 Brassica napus HOM05D004566 ORTHO05D006041 1.1e-64 250.0 137 85.4
BraA02t07132Z Brassica rapa HOM05D004566 ORTHO05D006041 1.1e-64 250.0 137 85.4
TWI15G0549 Tripterygium wilfordii HOM05D004566 ORTHO05D006041 1.1e-64 250.0 139 84.2
AL2G37320 Arabidopsis lyrata HOM05D004566 ORTHO05D006041 1.4e-64 249.6 137 86.1
CARHR070630 Cardamine hirsuta HOM05D004566 ORTHO05D006041 1.4e-64 249.6 137 86.1
ATR0706G031 Amborella trichopoda HOM05D004566 ORTHO05D006041 1.9e-64 249.2 136 86.8
AT1G77140 Arabidopsis thaliana HOM05D004566 ORTHO05D006041 1.9e-64 249.2 137 85.4
CAN.G744.14 Capsicum annuum HOM05D004566 ORTHO05D006041 1.9e-64 249.2 139 84.9
MELO3C008406.2 Cucumis melo HOM05D004566 ORTHO05D006041 1.9e-64 249.2 136 87.5
CsaV3_6G030940 Cucumis sativus L. HOM05D004566 ORTHO05D006041 1.9e-64 249.2 136 86.8
DCAR_023123 Daucus carota HOM05D004566 ORTHO05D006041 2.4e-64 248.8 139 84.9
Potri.002G071600 Populus trichocarpa HOM05D004566 ORTHO05D006041 2.4e-64 248.8 139 85.6
A02p21150 Brassica napus HOM05D004566 ORTHO05D006041 3.2e-64 248.4 137 84.7
Thhalv10018344m.g Eutrema salsugineum HOM05D004566 ORTHO05D006041 3.2e-64 248.4 137 85.4
PSO170G1270 Papaver somniferum HOM05D004566 ORTHO05D006041 3.2e-64 248.4 135 85.2
Solyc04g064820.3 Solanum lycopersicum HOM05D004566 ORTHO05D006041 3.2e-64 248.4 136 86.8
Sopen04g026780 Solanum pennellii HOM05D004566 ORTHO05D006041 3.2e-64 248.4 136 86.8
Sp5g32320 Schrenkiella parvula HOM05D004566 ORTHO05D006041 4.2e-64 248.1 137 85.4
Sed0000192 Sechium edule HOM05D004566 ORTHO05D006041 5.4e-64 247.7 139 84.9
EL10Ac5g10990 Beta vulgaris HOM05D004566 ORTHO05D006041 1.2e-63 246.5 139 82.7
AUR62018460 Chenopodium quinoa HOM05D004566 ORTHO05D006041 1.2e-63 246.5 136 87.5
BcaB02g07097 Brassica carinata HOM05D004566 ORTHO05D006041 1.6e-63 246.1 137 84.7
Gohir.A02G108700 Gossypium hirsutum HOM05D004566 ORTHO05D006041 1.6e-63 246.1 136 86.8
C06p31440 Brassica napus HOM05D004566 ORTHO05D006041 2.7e-63 245.4 137 83.9
Cc03_g13150 Coffea canephora HOM05D004566 ORTHO05D006041 3.5e-63 245.0 139 84.2
Gohir.D03G061100 Gossypium hirsutum HOM05D004566 ORTHO05D006041 3.5e-63 245.0 136 85.3
Gorai.013G105000 Gossypium raimondii HOM05D004566 ORTHO05D006041 3.5e-63 245.0 136 85.3
SGA_v2.0_scaffold19G08652 Striga asiatica HOM05D004566 ORTHO05D006041 4.6e-63 244.6 141 85.1
AUR62020958 Chenopodium quinoa HOM05D004566 ORTHO05D006041 6.0e-63 244.2 139 83.5
Manes.02G175600 Manihot esculenta HOM05D004566 ORTHO05D006041 6.0e-63 244.2 140 81.4
Aa31LG11G11410 Aethionema arabicum HOM05D004566 ORTHO05D006041 7.8e-63 243.8 137 86.1
HPP92_000105 Vanilla planifolia HOM05D004566 ORTHO05D006041 1.0e-62 243.4 140 80.7
Sc02g0000500 Simmondsia chinensis HOM05D004566 ORTHO05D006041 1.3e-62 243.0 139 83.5
BcaB05g25023 Brassica carinata HOM05D004566 ORTHO05D006041 2.3e-62 242.3 138 84.1
Rhsim02G0231500 Rhododendron simsii HOM05D004566 ORTHO05D006041 3.0e-62 241.9 159 76.1
Migut.N03233 Erythranthe guttata HOM05D004566 ORTHO05D006041 5.1e-62 241.1 139 82.0
Zm00001eb172280 Zea mays HOM05D004566 ORTHO05D006041 5.1e-62 241.1 140 82.9
THA.LOC104810036 Tarenaya hassleriana HOM05D004566 ORTHO05D006041 8.7e-62 240.4 137 82.5
SalBow6G5540 Salvia bowleyana HOM05D004566 ORTHO05D006041 1.9e-61 239.2 136 83.1
MSTRG.24197 Avicennia marina HOM05D004566 ORTHO05D006041 2.5e-61 238.8 136 83.8
Os02g0437800 Oryza sativa ssp. japonica HOM05D004566 ORTHO05D006041 7.3e-61 237.3 140 81.4
SEGI_30655 Sequoiadendron giganteum HOM05D004566 ORTHO05D006041 1.6e-60 236.1 136 81.6
SGA_v2.0_scaffold25G11162 Striga asiatica HOM05D004566 ORTHO05D006041 1.1e-59 233.4 160 75.0
vmacro05453 Vaccinium macrocarpon HOM05D004566 ORTHO05D006041 1.2e-58 229.9 177 67.2
Lj4A692G26 Lonicera japonica HOM05D004566 ORTHO05D006041 1.5e-58 229.6 121 90.9
Atru.chr13.1721 Acer truncatum HOM05D004566 ORTHO05D006041 2.0e-58 229.2 123 87.8
Ca_16654_v3 Cicer arietinum L. HOM05D004566 ORTHO05D006041 7.6e-58 227.3 120 90.0
SHI09399 Sapria himalayana HOM05D004566 ORTHO05D006041 7.1e-56 220.7 120 87.5
MBI11_g07422_MAGBIO Magnolia biondii HOM05D004566 ORTHO05D006041 1.2e-55 219.9 122 86.9
C06p31110 Brassica napus HOM05D004566 ORTHO05D006041 1.0e-54 216.9 120 84.2
BcaC08g45467 Brassica carinata HOM05D004566 ORTHO05D006041 3.0e-54 215.3 120 84.2
Mapoly0133s0009 Marchantia polymorpha HOM05D004566 ORTHO05D006041 8.7e-54 213.8 138 73.2
Pp3c18_21360 Physcomitrium patens HOM05D004566 ORTHO05D006041 7.4e-53 210.7 134 76.1
SMO118G0298 Selaginella moellendorffii HOM05D004566 ORTHO05D006041 2.8e-52 208.8 136 73.5
CDE06G0844 Ceratophyllum demersum HOM05D004566 ORTHO05D006041 3.2e-48 195.3 110 80.9
CBR_g40854 Chara braunii HOM05D004566 ORTHO05D006041 4.8e-44 181.4 136 64.0
Ah.04g149960 Amaranthus hybridus HOM05D004566 ORTHO05D006041 2.8e-36 155.6 139 59.7
Lsat_1_v5_gn_9_77820 Lactuca sativa HOM05D004566 ORTHO05D006041 4.8e-36 154.8 77 93.5
TWI60G0810 Tripterygium wilfordii HOM05D004566 ORTHO05D006041 3.1e-35 152.1 139 57.6
MCO01G317 Micromonas commoda HOM05D004566 ORTHO05D006041 1.8e-27 126.3 129 45.0
BcaC08g45487 Brassica carinata HOM05D004566 ORTHO05D006041 4.1e-27 125.2 65 90.8
BolC6t38277H Brassica oleracea HOM05D004566 ORTHO05D006041 4.1e-27 125.2 65 90.8
PRCOL_00003824 Prasinoderma coloniale HOM05D004566 ORTHO05D006041 2.5e-24 115.9 132 47.0
Cre07.g333950 Chlamydomonas reinhardtii HOM05D004566 ORTHO05D006041 2.3e-22 109.4 166 35.5
QL09p046766 Quercus lobata HOM05D004566 ORTHO05D006041 1.1e-21 107.1 66 83.3
unitig_52.g17535 Utricularia gibba HOM05D004566 ORTHO05D006041 5.7e-21 104.8 99 56.6
BolC6t38255H Brassica oleracea HOM05D000671 ORTHO05D041904 6.5e-17 91.3 59 71.2
AagrBONN_evm.TU.Sc2ySwM_344.3227 Anthoceros agrestis HOM05D004566 ORTHO05D006041 4.7e-15 85.1 49 79.6
BolC6t38256H Brassica oleracea HOM05D004566 ORTHO05D006041 7.9e-15 84.3 47 83.0
BraA07t30434Z Brassica rapa HOM05D004566 ORTHO05D006041 8.8e-14 80.9 41 90.2
COL.COLO4_03835 Corchorus olitorius HOM05D004566 ORTHO05D006041 4.1e-11 72.0 36 94.4
BcaC08g45465 Brassica carinata HOM05D004566 ORTHO05D006041 1.5e-08 63.5 33 84.8
BraA07t30433Z Brassica rapa HOM05D004566 ORTHO05D006041 4.0e-06 55.5 32 78.1


User provided reference genes

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