Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 0.0e+00 1195.3 612 100.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-296 1022.7 613 84.5
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.6e-296 1021.5 616 83.8
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.2e-293 1012.7 616 83.4
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 3.4e-272 941.4 621 78.3
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 8.2e-266 920.2 616 74.5
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 8.2e-266 920.2 614 77.0
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 1.8e-265 919.1 613 74.9
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.4e-265 918.7 614 76.7
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.5e-264 916.0 614 74.3
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 3.4e-264 914.8 613 75.9
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 3.4e-264 914.8 615 75.4
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 7.6e-264 913.7 614 76.1
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.7e-263 912.5 614 76.1
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.2e-263 912.1 613 75.9
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 8.4e-263 910.2 624 75.2
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.1e-262 909.8 614 75.9
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.9e-262 909.1 614 75.7
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 7.2e-262 907.1 614 75.2
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 3.0e-260 901.7 615 75.8
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.9e-260 901.4 614 74.3
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 5.1e-260 901.0 614 73.9
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.1e-259 899.8 615 75.9
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.6e-258 896.0 615 75.0
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 4.8e-258 894.4 614 74.3
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.1e-257 891.3 629 73.3
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 6.9e-257 890.6 613 74.6
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 6.9e-257 890.6 613 74.2
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 6.9e-257 890.6 613 74.2
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 2.9e-255 885.2 616 73.4
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 5.0e-255 884.4 614 74.6
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.5e-251 872.8 610 73.0
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 3.3e-251 871.7 613 71.5
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 5.7e-251 870.9 619 73.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.2e-250 869.0 619 73.0
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 5.3e-249 864.4 617 70.5
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 7.7e-248 860.5 691 65.4
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.0e-247 860.1 616 70.5
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 2.9e-247 858.6 500 88.8
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 5.0e-247 857.8 621 71.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.1e-243 846.7 617 70.2
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.0e-243 845.9 617 69.9
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 2.0e-243 845.9 744 60.8
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 2.0e-243 845.9 615 70.1
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 9.7e-243 843.6 613 69.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.2e-242 842.4 618 70.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.4e-241 839.0 618 70.2
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 3.1e-241 838.6 616 69.6
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 3.1e-241 838.6 617 70.0
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 9.1e-241 837.0 616 69.8
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.0e-240 835.9 614 70.0
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 3.5e-240 835.1 617 69.9
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 7.7e-240 833.9 605 70.2
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.3e-239 833.2 616 68.5
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.1e-238 830.1 612 69.1
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.2e-238 828.2 617 69.7
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 4.0e-236 821.6 612 66.8
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 5.2e-236 821.2 572 74.1
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 2.6e-235 818.9 613 67.4
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 7.5e-235 817.4 575 74.3
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 1.7e-234 816.2 612 65.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.7e-234 816.2 616 67.4
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.2e-234 815.8 602 69.9
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.8e-234 815.5 615 68.6
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 6.3e-234 814.3 564 72.5
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 4.1e-233 811.6 613 65.7
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 7.0e-233 810.8 613 65.9
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 9.1e-233 810.4 613 65.6
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 9.1e-233 810.4 614 68.6
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.2e-232 810.1 613 65.6
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.0e-232 809.3 615 66.0
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 2.7e-232 808.9 613 65.6
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 2.2e-231 805.8 615 66.5
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 8.5e-231 803.9 613 64.8
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.1e-230 803.5 613 65.4
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.5e-230 802.4 613 65.3
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 4.2e-230 801.6 613 65.7
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 4.2e-230 801.6 607 68.7
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 4.7e-229 798.1 608 67.8
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.2e-227 793.5 567 72.5
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 9.1e-225 783.9 615 66.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.2e-222 775.4 619 64.1
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.2e-221 773.5 549 73.6
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.7e-221 771.5 551 73.1
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 4.7e-221 771.5 619 64.1
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 7.5e-219 764.2 597 66.3
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.9e-215 752.3 614 63.7
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.6e-205 718.8 614 61.4
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.0e-196 688.7 621 59.9
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.1e-188 664.1 625 56.2
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.5e-179 633.6 614 57.0
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.4e-179 632.1 687 54.6
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-177 624.8 384 83.9
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.1e-169 600.9 678 49.1
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.9e-166 590.1 528 59.5
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.6e-163 579.7 498 63.5
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.8e-151 540.4 353 76.5
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 3.0e-151 539.7 386 72.5
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.1e-148 529.3 502 55.4
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.8e-140 503.8 360 71.4
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-138 496.9 391 71.1
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 3.2e-137 493.0 361 71.5
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 6.3e-125 452.2 437 56.8
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.5e-113 412.5 257 81.3
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 6.1e-112 409.1 257 80.9
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 6.3e-109 399.1 324 64.5
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 4.0e-103 379.8 647 37.9
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 7.5e-102 375.6 256 73.0
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 5.0e-98 362.8 244 74.2
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.6e-91 339.7 231 74.5
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 8.0e-88 328.9 216 79.2
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 5.2e-87 326.2 215 78.6
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.4e-84 318.2 179 83.8
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 2.8e-80 303.9 636 34.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.6e-56 223.8 185 64.3
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 4.2e-52 210.3 111 91.9
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-50 204.9 136 79.4
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.9e-49 201.4 111 89.2
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-49 201.1 109 89.0
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 4.3e-49 200.3 111 90.1
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 9.6e-49 199.1 129 80.6
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.1e-47 195.7 158 63.9
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-47 194.1 111 86.5
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 8.4e-45 186.0 110 80.9
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-42 178.7 129 75.2
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 5.8e-38 163.3 104 73.1
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 6.5e-37 159.8 99 79.8
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 2.8e-32 144.4 83 84.3
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.3e-32 143.3 82 81.7
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 2.1e-27 128.3 134 54.5
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 8.8e-26 122.9 69 87.0
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-25 122.1 72 79.2
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 8.2e-24 116.3 514 25.7
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-23 115.2 66 84.8
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 3.1e-23 114.4 81 64.2
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 3.1e-23 114.4 81 64.2
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.4e-20 105.5 83 57.8
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-20 105.5 55 83.6
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-17 94.4 55 81.8
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 7.4e-17 93.2 146 39.7
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 6.5e-13 80.1 50 80.0
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 4.2e-12 77.4 41 85.4
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 9.4e-12 76.3 40 90.0
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.2e-11 75.9 182 27.5
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 2.1e-11 75.1 182 27.5
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 6.1e-11 73.6 182 26.9
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.4e-10 72.4 41 85.4
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 4.4e-09 67.4 203 26.6
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.3e-08 65.9 41 65.9
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 6.3e-08 63.5 51 62.7
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.1e-07 62.8 45 66.7
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-07 62.4 46 67.4


User provided reference genes

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