Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 4.5e-129 464.5 225 100.0
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 3.6e-126 454.9 225 97.8
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.3e-99 366.7 226 78.8
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 2.0e-97 359.4 223 76.7
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.8e-97 357.5 223 76.7
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.0e-96 357.1 223 77.1
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.3e-96 355.9 223 76.7
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.3e-96 355.9 223 76.2
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 4.3e-95 351.7 226 75.7
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.2e-86 323.6 229 69.4
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.6e-84 315.8 231 68.8
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 7.1e-82 307.8 226 68.1
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 6.0e-81 304.7 225 65.3
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.6e-78 296.6 229 64.2
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.8e-78 295.8 230 64.8
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.8e-77 293.1 225 66.2
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 3.1e-77 292.4 231 64.9
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 4.0e-77 292.0 225 65.8
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 8.9e-77 290.8 225 64.9
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 2.0e-76 289.7 229 65.1
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 2.0e-76 289.7 229 65.1
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.6e-76 289.3 229 65.5
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.8e-76 288.1 227 62.6
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 9.9e-76 287.3 226 65.5
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 2.2e-75 286.2 225 62.2
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 2.2e-75 286.2 229 65.9
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 2.2e-75 286.2 225 63.1
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 2.9e-75 285.8 229 63.8
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 2.9e-75 285.8 230 64.8
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 3.7e-75 285.4 229 62.9
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.7e-75 285.4 231 62.3
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 6.4e-75 284.6 230 64.8
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 8.4e-75 284.3 228 64.0
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.4e-74 282.7 223 63.2
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 4.1e-74 282.0 229 63.3
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 7.1e-74 281.2 225 61.8
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.2e-73 280.4 229 62.9
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.6e-73 280.0 225 60.9
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 2.1e-73 279.6 226 62.8
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 2.7e-73 279.3 228 60.1
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.7e-73 279.3 226 63.3
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.0e-72 277.3 230 60.9
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.3e-72 276.9 224 61.2
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.7e-72 276.6 223 61.0
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.7e-72 276.6 225 61.3
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 3.9e-72 275.4 228 59.6
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.1e-72 275.0 224 64.3
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 6.6e-72 274.6 225 61.8
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.9e-71 273.1 226 61.5
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 5.6e-71 271.6 227 60.4
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 9.6e-71 270.8 225 59.6
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 9.6e-71 270.8 225 60.4
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 3.6e-70 268.9 219 59.4
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.4e-69 266.9 229 59.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.4e-69 266.9 228 56.6
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 1.8e-69 266.5 223 59.6
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.1e-69 265.8 229 59.8
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.6e-68 262.7 230 57.8
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 3.4e-68 262.3 226 58.8
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 5.8e-68 261.5 224 59.8
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 9.9e-68 260.8 224 59.4
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.9e-68 260.8 230 57.8
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 3.8e-67 258.8 226 58.0
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.2e-65 253.8 230 59.1
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.3e-64 250.4 223 58.3
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.7e-64 250.0 225 54.2
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.5e-63 246.1 188 63.8
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.6e-62 243.4 222 55.4
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 2.8e-62 242.7 227 54.6
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 4.8e-62 241.9 225 56.9
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 5.3e-61 238.4 227 53.7
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 5.3e-61 238.4 207 58.0
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.7e-59 233.4 230 52.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 1.7e-59 233.4 225 52.0
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 2.2e-59 233.0 207 56.5
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 4.9e-59 231.9 227 55.1
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 4.9e-59 231.9 225 55.1
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 4.9e-59 231.9 229 54.1
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 8.4e-59 231.1 225 55.6
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.1e-58 230.7 225 53.8
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.4e-58 229.6 225 54.7
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 7.1e-58 228.0 228 52.2
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 9.3e-58 227.6 228 53.1
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 9.3e-58 227.6 245 46.1
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.2e-57 227.3 228 52.2
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.6e-57 226.9 228 52.6
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 2.7e-57 226.1 199 56.8
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 3.5e-57 225.7 228 52.6
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 3.5e-57 225.7 225 53.8
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 3.5e-57 225.7 214 55.1
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 7.9e-57 224.6 228 52.2
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.7e-56 223.4 225 53.3
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 5.1e-56 221.9 222 55.0
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 8.7e-56 221.1 230 52.6
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 1.9e-50 203.4 219 51.6
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.9e-50 203.4 222 51.4
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 3.2e-50 202.6 222 50.5
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 9.3e-50 201.1 236 44.5
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.6e-49 200.3 216 49.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 2.7e-49 199.5 236 44.5
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.0e-48 197.6 217 48.8
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 9.6e-47 191.0 246 44.3
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.8e-45 186.8 245 43.7
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.0e-45 184.5 224 47.8
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.2e-44 184.1 145 65.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.5e-44 183.7 242 43.4
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.0e-44 183.3 259 39.4
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.0e-44 183.3 236 39.4
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.0e-44 183.3 223 42.6
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 2.5e-42 176.4 226 39.4
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 4.2e-42 175.6 239 41.0
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 2.1e-41 173.3 225 40.9
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.6e-41 172.2 227 41.9
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 7.9e-41 171.4 147 57.1
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 3.0e-40 169.5 220 45.5
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.0e-40 169.5 226 45.1
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.0e-40 169.5 226 42.5
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.9e-39 166.8 255 36.1
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.4e-39 164.9 225 40.9
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.4e-39 164.9 230 39.6
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.3e-38 164.1 229 39.3
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 2.1e-38 163.3 232 40.5
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 6.3e-38 161.8 258 37.6
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.2e-35 153.3 260 36.5
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 3.8e-35 152.5 227 34.4
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-34 150.2 250 36.4
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.2e-34 149.4 260 35.4
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 7.2e-34 148.3 149 47.7
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.6e-33 147.1 211 38.4
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 4.6e-33 145.6 179 43.0
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 7.9e-33 144.8 310 31.6
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 6.7e-32 141.7 274 32.1
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 8.7e-32 141.4 354 29.4
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 1.1e-31 141.0 214 37.9
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.9e-31 140.2 231 42.4
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 2.5e-31 139.8 246 35.4
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 2.5e-31 139.8 146 46.6
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.3e-31 139.0 231 42.0
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 5.7e-31 138.7 174 44.8
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 5.7e-31 138.7 174 44.8
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.4e-31 138.3 278 31.3
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.3e-30 137.5 225 35.1
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.8e-30 135.6 217 34.1
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 6.3e-30 135.2 153 44.4
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-29 134.0 276 30.1
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 9.0e-29 131.3 129 55.0
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 4.5e-28 129.0 146 47.9
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 8.5e-27 124.8 223 35.0
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 4.2e-26 122.5 107 54.2
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 3.6e-25 119.4 114 51.8
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 6.7e-24 115.2 161 38.5
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 4.3e-23 112.5 139 41.7
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 5.7e-23 112.1 139 41.0
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.7e-22 109.4 228 28.5
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.8e-21 107.1 142 40.1
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-17 94.4 75 60.0
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 7.9e-17 91.7 157 33.8
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.8e-16 90.5 115 40.0
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.7e-16 88.6 229 28.8
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-15 87.8 154 35.7
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-13 81.3 93 39.8
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.5e-12 76.3 165 30.9
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.8e-11 72.8 69 46.4
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 7.2e-10 68.6 190 26.3


User provided reference genes

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