Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 2.7e-49 198.4 102 100.0
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 2.8e-46 188.3 101 94.1
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 6.7e-40 167.2 101 85.1
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 2.7e-33 145.2 102 79.4
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 3.6e-33 144.8 102 80.4
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 3.6e-33 144.8 102 80.4
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.8e-32 142.5 102 79.4
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.8e-32 142.5 102 79.4
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.3e-30 136.3 102 76.5
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 3.1e-29 131.7 108 69.4
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 3.1e-29 131.7 108 69.4
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 4.1e-29 131.3 107 71.0
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 7.0e-29 130.6 105 71.4
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 7.0e-29 130.6 105 71.4
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 5.9e-28 127.5 88 78.4
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 1.0e-27 126.7 101 71.3
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.7e-27 125.9 107 67.3
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.7e-27 125.9 107 67.3
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 2.3e-27 125.6 105 68.6
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 1.1e-26 123.2 101 67.3
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 2.5e-26 122.1 101 69.3
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 3.3e-26 121.7 101 66.3
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 3.3e-26 121.7 101 69.3
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 3.3e-26 121.7 91 70.3
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 4.2e-26 121.3 89 73.0
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 4.2e-26 121.3 95 67.4
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 4.2e-26 121.3 101 68.3
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 9.5e-26 120.2 101 65.3
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 1.2e-25 119.8 89 73.0
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 1.2e-25 119.8 101 65.3
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 1.6e-25 119.4 91 70.3
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 3.6e-25 118.2 96 65.6
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 3.6e-25 118.2 91 70.3
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 6.1e-25 117.5 89 73.0
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 6.1e-25 117.5 89 71.9
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 6.1e-25 117.5 103 65.0
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 1.4e-24 116.3 89 71.9
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 1.4e-24 116.3 103 65.0
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.8e-24 115.9 99 64.6
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 4.0e-24 114.8 109 64.2
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 4.0e-24 114.8 95 68.4
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 5.2e-24 114.4 101 63.4
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 5.2e-24 114.4 101 63.4
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 6.8e-24 114.0 101 66.3
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 6.8e-24 114.0 101 66.3
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 8.9e-24 113.6 101 63.4
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 1.2e-23 113.2 101 63.4
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 1.2e-23 113.2 101 63.4
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.2e-23 113.2 99 66.7
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 1.5e-23 112.8 101 62.4
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 1.5e-23 112.8 101 62.4
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 2.0e-23 112.5 90 65.6
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 2.6e-23 112.1 102 64.7
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 3.4e-23 111.7 88 70.5
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 3.4e-23 111.7 101 62.4
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 3.4e-23 111.7 101 62.4
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 3.4e-23 111.7 101 62.4
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 3.4e-23 111.7 101 62.4
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 3.4e-23 111.7 116 59.5
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 3.4e-23 111.7 101 64.4
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 4.4e-23 111.3 91 67.0
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 5.7e-23 110.9 88 69.3
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 7.5e-23 110.5 94 68.1
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 1.3e-22 109.8 91 63.7
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 2.2e-22 109.0 106 64.2
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 2.2e-22 109.0 88 67.0
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 2.8e-22 108.6 88 67.0
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 3.7e-22 108.2 102 63.7
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 3.7e-22 108.2 101 61.4
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 3.7e-22 108.2 97 61.9
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 4.9e-22 107.8 92 67.4
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 6.3e-22 107.5 88 65.9
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 6.3e-22 107.5 112 59.8
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 8.3e-22 107.1 96 61.5
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 1.8e-21 105.9 107 62.6
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 4.1e-21 104.8 95 60.0
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 5.4e-21 104.4 91 61.5
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 5.4e-21 104.4 89 64.0
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 7.0e-21 104.0 95 63.2
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 7.0e-21 104.0 95 60.0
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 9.2e-21 103.6 109 56.9
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 9.2e-21 103.6 89 64.0
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 9.2e-21 103.6 91 62.6
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 1.6e-20 102.8 96 58.3
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 2.7e-20 102.1 110 57.3
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 2.7e-20 102.1 90 63.3
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 1.3e-19 99.8 88 65.9
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 2.3e-19 99.0 91 58.2
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 8.6e-19 97.1 85 61.2
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 4.3e-18 94.7 99 57.6
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 3.6e-17 91.7 82 63.4
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 4.7e-17 91.3 101 52.5
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 6.1e-17 90.9 98 54.1
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 8.0e-17 90.5 96 54.2
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 3.0e-16 88.6 101 52.5
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 3.0e-16 88.6 101 52.5
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 8.9e-16 87.0 92 54.3
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 3.4e-15 85.1 49 79.6
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 3.4e-15 85.1 49 79.6
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 3.4e-15 85.1 49 83.7
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 4.4e-15 84.7 49 79.6
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 4.4e-15 84.7 49 79.6
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 5.8e-15 84.3 49 79.6
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 5.8e-15 84.3 101 50.5
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 9.8e-15 83.6 49 79.6
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 9.8e-15 83.6 49 81.6
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 1.7e-14 82.8 46 87.0
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 2.9e-14 82.0 49 75.5
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 5.4e-13 77.8 49 75.5
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 9.2e-13 77.0 44 81.8
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 1.2e-12 76.6 89 52.8
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 1.6e-12 76.3 52 73.1
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 4.6e-12 74.7 51 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 1.3e-11 73.2 89 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 1.7e-11 72.8 102 46.1
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 1.7e-11 72.8 88 53.4
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 3.0e-11 72.0 49 71.4
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 1.5e-10 69.7 77 53.2
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 3.3e-10 68.6 102 42.2
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 3.3e-10 68.6 46 73.9
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 7.3e-10 67.4 46 69.6
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 6.2e-09 64.3 50 62.0
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 5.2e-08 61.2 38 73.7
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 2.0e-07 59.3 99 40.4
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 2.6e-07 58.9 48 56.2


User provided reference genes

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