Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 2.3e-193 678.7 338 100.0
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 8.7e-185 650.2 338 95.3
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 7.2e-171 604.0 340 87.9
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 7.2e-171 604.0 340 87.9
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 1.0e-169 600.1 340 87.9
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.3e-169 599.0 338 87.9
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.5e-168 596.3 338 87.9
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 3.8e-164 581.6 331 86.1
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 3.8e-164 581.6 320 87.5
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 8.5e-164 580.5 326 86.8
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 3.2e-163 578.6 345 83.8
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 7.2e-163 577.4 328 85.7
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 9.4e-163 577.0 322 87.9
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.6e-162 576.2 328 85.4
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 2.1e-162 575.9 328 85.1
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 1.0e-161 573.5 331 85.8
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 3.0e-161 572.0 331 84.0
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 5.1e-161 571.2 330 84.8
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 8.8e-161 570.5 321 86.6
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 2.6e-160 568.9 340 82.9
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 5.7e-160 567.8 327 83.2
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 5.7e-160 567.8 327 83.2
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 9.7e-160 567.0 331 84.6
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.7e-159 566.2 329 84.2
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 2.8e-159 565.5 318 85.8
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 6.3e-159 564.3 321 86.3
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 8.2e-159 563.9 323 85.4
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 1.4e-158 563.1 330 84.5
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 2.4e-158 562.4 328 84.8
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 5.3e-158 561.2 322 85.1
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 5.3e-158 561.2 325 84.3
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 3.4e-157 558.5 318 85.5
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 3.4e-157 558.5 330 82.7
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 4.5e-157 558.1 333 80.5
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 5.9e-157 557.8 318 84.3
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 5.9e-157 557.8 347 79.5
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 7.7e-157 557.4 319 84.3
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.0e-156 557.0 324 84.6
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.0e-156 557.0 319 84.3
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 1.3e-156 556.6 319 84.6
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.3e-156 556.6 319 84.3
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.7e-156 556.2 320 83.1
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.7e-156 556.2 327 83.2
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 1.7e-156 556.2 321 85.0
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 1.7e-156 556.2 320 84.7
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 3.8e-156 555.1 320 85.0
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 6.5e-156 554.3 317 83.3
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 4.2e-155 551.6 323 83.6
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 2.1e-154 549.3 332 78.9
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.1e-154 549.3 321 82.6
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 3.6e-154 548.5 321 82.6
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 3.6e-154 548.5 320 82.2
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 4.7e-154 548.1 321 82.6
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 4.7e-154 548.1 332 80.7
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 6.1e-154 547.7 333 80.2
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 7.9e-154 547.4 327 79.5
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 1.0e-153 547.0 314 84.4
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 2.3e-153 545.8 331 81.0
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 5.2e-153 544.7 330 80.6
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 8.8e-153 543.9 330 80.0
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.1e-152 543.5 330 77.3
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.1e-152 543.5 318 82.4
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 2.0e-152 542.7 330 79.4
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 5.7e-152 541.2 330 79.1
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.3e-151 540.0 320 80.9
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 4.1e-150 535.0 333 78.7
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 4.1e-150 535.0 319 79.9
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 9.1e-150 533.9 331 77.6
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.3e-148 530.0 315 82.9
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 1.7e-148 529.6 322 79.5
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.9e-147 526.2 331 77.3
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 2.5e-147 525.8 319 78.1
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 5.5e-147 524.6 330 77.9
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 1.2e-146 523.5 319 78.7
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 1.6e-146 523.1 321 78.2
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 6.1e-146 521.2 296 86.8
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 2.3e-145 519.2 324 79.3
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 5.2e-145 518.1 262 96.6
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 1.5e-144 516.5 319 78.1
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 1.5e-144 516.5 334 77.2
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 2.0e-144 516.2 327 74.9
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 3.3e-144 515.4 334 76.9
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 4.4e-144 515.0 319 77.4
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 3.7e-143 511.9 320 77.2
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 3.7e-143 511.9 320 77.2
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 1.4e-142 510.0 317 77.6
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 1.4e-142 510.0 327 76.5
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 1.8e-142 509.6 320 76.9
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 2.4e-142 509.2 320 75.9
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 3.8e-140 501.9 333 74.5
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 5.0e-140 501.5 329 73.3
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 6.5e-140 501.1 331 74.0
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 6.5e-140 501.1 291 83.5
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.2e-138 496.9 293 82.3
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 1.2e-138 496.9 327 77.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 6.1e-138 494.6 299 81.9
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 4.4e-136 488.4 297 79.8
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 2.8e-135 485.7 351 68.1
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 1.4e-134 483.4 326 77.3
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.8e-129 466.5 257 87.9
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.3e-129 466.1 257 87.9
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 2.6e-128 462.6 254 88.2
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 3.4e-128 462.2 325 72.6
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 7.5e-128 461.1 342 69.3
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 1.7e-127 459.9 287 77.4
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 6.1e-122 441.4 281 79.0
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.2e-117 427.2 258 81.8
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 2.9e-111 406.0 222 88.3
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 8.3e-111 404.4 229 87.3
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 2.5e-107 392.9 331 59.8
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 1.2e-106 390.6 325 60.6
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 1.3e-103 380.6 326 58.6
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 1.9e-83 313.5 209 76.6
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 8.1e-82 308.1 349 50.4
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 3.1e-81 306.2 276 62.7
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 3.2e-78 296.2 206 68.9
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.3e-76 290.8 174 81.6
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 2.6e-64 250.0 207 62.3
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 6.5e-63 245.4 143 81.8
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 7.1e-62 241.9 215 61.4
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 1.1e-51 208.0 323 37.5
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.9e-51 207.2 315 43.8
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 6.9e-49 198.7 176 60.8
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 7.2e-46 188.7 236 45.3
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 1.3e-42 177.9 408 32.6
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 8.5e-39 165.2 114 71.9
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.2e-37 161.4 116 67.2
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 3.9e-36 156.4 232 47.4
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 4.8e-34 149.4 316 35.4
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 1.6e-21 107.8 250 34.8
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.2e-19 101.7 57 87.7
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 4.5e-16 89.7 45 93.3
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 5.9e-16 89.4 98 51.0
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 7.2e-14 82.4 55 74.5
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 9.8e-11 72.0 78 51.3
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 1.6e-08 64.7 30 90.0
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 3.8e-07 60.1 42 71.4
Nitab4.5_0016721g0010 Nicotiana tabacum HOM05D002908 ORTHO05D283189 3.8e-07 60.1 74 54.1


User provided reference genes

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