Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 0.0e+00 1724.9 1382 100.0
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 0.0e+00 1365.9 1382 81.8
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 0.0e+00 1151.7 1382 71.4
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 8.2e-282 974.5 1383 66.6
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.7e-256 889.8 1385 63.3
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 4.7e-253 879.0 1385 65.1
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.0e-251 873.6 1385 63.5
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.1e-245 851.7 1398 63.4
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 3.4e-243 846.3 1384 58.1
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 1.7e-239 833.9 1385 51.8
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.3e-236 823.5 1386 59.2
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 1.1e-230 804.7 1384 59.4
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.1e-229 798.5 1398 63.2
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.1e-229 798.5 1398 63.2
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 5.8e-227 792.3 1383 53.8
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 4.6e-224 782.7 1386 58.4
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 3.4e-211 740.0 1553 44.0
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 3.4e-211 740.0 1386 52.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 9.9e-211 738.4 1386 52.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.0e-203 714.1 1443 51.9
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.3e-202 711.4 1385 53.4
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.1e-201 708.4 1364 50.9
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 8.2e-197 692.2 1114 51.2
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.2e-195 688.3 1310 51.1
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.0e-194 685.3 1354 49.9
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.3e-194 684.9 1468 48.3
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 6.1e-192 676.0 1416 55.2
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.1e-190 671.8 1390 54.6
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 5.7e-190 669.5 1385 55.4
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.6e-189 667.9 1385 55.1
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.4e-188 664.1 1379 55.7
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.2e-187 661.8 1379 55.3
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 2.5e-185 654.1 1384 51.5
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 5.5e-185 652.9 1385 52.1
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 1.2e-184 651.7 1384 54.4
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.7e-184 650.6 1384 48.7
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 4.8e-181 639.8 1364 53.8
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.6e-179 634.0 1387 49.9
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.5e-179 633.3 1379 54.3
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.3e-178 631.7 1384 49.1
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.2e-176 625.2 1348 49.4
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.4e-172 610.9 1385 50.0
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.2e-171 608.6 1385 54.3
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.5e-171 607.1 1384 51.5
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.9e-170 604.0 1384 47.6
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 6.7e-167 592.8 1584 41.0
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.2e-166 592.0 1560 43.5
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 3.1e-164 583.9 1589 41.7
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 1.6e-163 581.6 1375 49.3
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.7e-163 580.9 1384 53.0
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.7e-162 578.2 1637 37.8
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 3.2e-161 573.9 1384 46.0
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 2.1e-160 571.2 1582 38.6
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.0e-159 568.9 1389 43.6
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.8e-159 568.2 1384 51.2
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 8.8e-159 565.8 1383 46.7
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 7.7e-155 552.7 1385 50.2
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.0e-154 552.4 1387 47.3
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 2.2e-154 551.2 1578 41.8
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 2.9e-154 550.8 945 62.5
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 2.7e-147 527.7 1383 43.7
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 6.6e-146 523.1 1637 40.4
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.0e-143 515.8 1385 44.8
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.8e-140 505.0 1577 42.0
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 3.0e-138 497.7 1578 41.7
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 2.1e-136 491.5 1386 49.2
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 2.1e-136 491.5 1108 37.2
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 6.2e-136 490.0 1389 48.2
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 5.2e-135 486.9 622 51.8
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.2e-134 485.7 1443 41.1
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.3e-133 482.3 1388 40.9
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.2e-132 477.6 1380 45.1
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.1e-128 464.9 1383 42.7
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.7e-128 463.8 1380 44.9
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.4e-127 462.2 1380 45.3
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 3.5e-123 447.6 1576 38.5
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 7.8e-123 446.4 1397 47.2
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.7e-122 445.3 1386 48.3
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 2.0e-118 431.8 1387 44.4
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.1e-116 426.0 1450 43.7
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 5.4e-116 423.7 1340 38.7
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.4e-108 398.3 1155 37.1
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.7e-107 394.8 1396 34.7
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 5.3e-103 380.6 1031 42.1
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 1.9e-100 372.1 1381 39.2
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.3e-97 361.3 1446 33.0
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.2e-94 352.8 1386 40.0
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 7.9e-91 340.1 1385 43.9
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 2.8e-88 331.6 1383 43.0
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.0e-82 313.2 1934 31.4
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 1.0e-77 296.6 1413 37.5
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 5.0e-77 294.3 1390 39.1
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 4.8e-72 277.7 1303 34.5
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 3.2e-68 265.0 602 37.0
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 3.2e-68 265.0 419 47.5
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 3.6e-67 261.5 427 45.7
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 6.3e-64 250.8 646 34.7
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.4e-58 233.0 998 45.6
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 8.8e-58 230.3 644 35.9
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 8.8e-58 230.3 509 33.8
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.4e-55 223.0 607 39.5
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.6e-54 219.5 429 42.4
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.5e-52 211.1 347 42.1
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 8.0e-51 207.2 1433 34.7
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.7e-50 204.1 358 42.5
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 5.7e-49 201.1 418 37.8
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.2e-46 193.4 260 49.2
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.2e-46 193.4 1401 39.8
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.0e-46 192.6 618 31.2
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.7e-45 189.5 249 50.2
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 5.0e-45 188.0 409 37.2
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 3.2e-44 185.3 1368 28.7
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 4.7e-43 181.4 549 31.5
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 2.3e-42 179.1 645 29.9
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 2.8e-40 172.2 507 42.8
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 2.8e-40 172.2 173 56.6
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 1.4e-39 169.9 210 56.2
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.6e-38 166.4 350 38.9
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 2.7e-38 165.6 403 35.2
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 4.5e-38 164.9 639 33.3
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 5.0e-37 161.4 1385 38.3
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 5.0e-37 161.4 397 38.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.5e-36 159.8 852 27.5
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.1e-35 154.5 455 38.0
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.2e-30 140.2 622 35.0
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-30 140.2 407 32.7
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.2e-30 140.2 414 35.0
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.0e-30 139.4 625 29.1
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.5e-30 138.7 1385 34.5
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.7e-29 136.3 1177 25.4
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 5.0e-29 134.8 299 38.1
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 6.6e-29 134.4 227 42.7
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.5e-28 133.3 416 37.5
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.5e-28 133.3 416 37.5
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 3.3e-28 132.1 645 26.2
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.8e-26 126.3 359 33.1
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.8e-26 126.3 218 39.9
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-25 123.6 416 36.5
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.5e-25 123.2 407 37.1
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.6e-25 122.5 148 47.3
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-22 113.6 360 31.1
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 4.6e-22 111.7 174 42.0
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 3.9e-21 108.6 353 32.0
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 3.9e-21 108.6 353 32.0
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 1.5e-20 106.7 445 28.1
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.5e-20 105.9 160 46.2
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.5e-20 105.9 160 46.2
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 2.8e-19 102.4 340 36.5
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-18 100.5 122 54.9
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.5e-17 96.7 646 26.2
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 9.8e-17 94.0 160 46.2
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 3.7e-16 92.0 202 33.2
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 6.4e-16 91.3 427 24.4
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 8.3e-16 90.9 1194 28.7
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.4e-15 89.4 346 31.8
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.6e-14 86.7 233 32.2
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.5e-14 85.5 233 32.2
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.7e-13 83.2 178 38.8
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 8.6e-13 80.9 92 55.4
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.1e-12 80.5 186 32.8
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 3.3e-12 79.0 362 32.6
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 5.6e-12 78.2 482 25.7
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 2.8e-11 75.9 446 26.5
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 4.7e-11 75.1 401 22.9
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 3.1e-10 72.4 450 21.8
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 5.2e-10 71.6 446 26.5
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 6.8e-10 71.2 406 23.4
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 6.8e-10 71.2 732 23.1
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 2.0e-09 69.7 1483 38.2
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 4.1e-07 62.0 464 25.0
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 7.1e-07 61.2 79 44.3
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 9.2e-07 60.8 58 53.4
COL.COLO4_25875 Corchorus olitorius HOM05D002721 ORTHO05D002919 1.2e-06 60.5 453 23.0
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 1.6e-06 60.1 80 45.0
C01p42510 Brassica napus HOM05D003806 ORTHO05D004346 4.6e-06 58.5 103 37.9
MBI15_g42002_MAGBIO Magnolia biondii HOM05D002721 ORTHO05D002919 6.0e-06 58.2 183 29.5


User provided reference genes

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