Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 2.6e-89 332.0 169 100.0
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-51 206.8 108 90.7
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.7e-48 196.4 108 84.3
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.2e-46 190.3 113 77.9
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.1e-46 189.5 113 78.8
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.6e-46 188.7 113 78.8
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 4.7e-46 188.3 113 77.9
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.7e-46 188.3 113 78.8
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.7e-46 188.3 113 77.9
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.0e-45 187.2 113 79.6
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.8e-45 184.5 113 77.0
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-44 183.7 113 77.0
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.5e-44 183.3 116 73.3
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.6e-44 182.6 122 72.1
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.4e-44 182.2 116 73.3
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 4.4e-44 181.8 122 71.3
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 4.4e-44 181.8 119 74.8
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 7.5e-44 181.0 114 73.7
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 7.5e-44 181.0 118 72.9
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.7e-43 179.9 138 64.5
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.8e-43 179.1 116 72.4
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 3.7e-43 178.7 122 68.9
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 4.8e-43 178.3 121 71.9
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 4.8e-43 178.3 108 76.9
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 8.3e-43 177.6 122 70.5
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.3e-43 177.6 121 69.4
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 8.3e-43 177.6 105 81.0
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.1e-42 177.2 114 72.8
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.1e-42 177.2 119 70.6
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.1e-42 177.2 108 76.9
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.1e-42 177.2 116 75.0
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.4e-42 176.8 108 75.0
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.4e-42 176.8 121 69.4
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.4e-42 176.8 108 75.9
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.8e-42 176.4 121 69.4
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 3.1e-42 175.6 114 73.7
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 5.4e-42 174.9 108 74.1
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 5.4e-42 174.9 128 65.6
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 7.0e-42 174.5 123 65.0
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 9.1e-42 174.1 123 68.3
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 9.1e-42 174.1 108 75.0
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.6e-41 173.3 121 67.8
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.6e-41 173.3 108 75.0
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.6e-41 173.3 108 75.0
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.0e-41 172.9 121 68.6
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 2.0e-41 172.9 107 75.7
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.7e-41 172.6 121 71.1
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 3.5e-41 172.2 117 70.9
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 3.5e-41 172.2 114 71.1
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 4.5e-41 171.8 123 68.3
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 4.5e-41 171.8 105 78.1
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.5e-41 171.8 122 67.2
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 5.9e-41 171.4 114 71.1
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 5.9e-41 171.4 107 72.0
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 5.9e-41 171.4 117 68.4
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 5.9e-41 171.4 122 67.2
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 7.7e-41 171.0 122 65.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 7.7e-41 171.0 105 75.2
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.0e-40 170.6 122 69.7
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.0e-40 170.6 114 72.8
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.3e-40 170.2 116 69.0
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.3e-40 170.2 107 72.0
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.3e-40 170.2 117 67.5
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.7e-40 169.9 119 70.6
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.7e-40 169.9 109 73.4
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.7e-40 169.9 122 68.0
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.7e-40 169.9 115 67.8
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.3e-40 169.5 118 69.5
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 3.8e-40 168.7 110 68.2
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 3.8e-40 168.7 132 61.4
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 3.8e-40 168.7 122 67.2
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 3.8e-40 168.7 107 75.7
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.8e-40 168.7 116 67.2
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 5.0e-40 168.3 110 69.1
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 5.0e-40 168.3 106 74.5
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 6.6e-40 167.9 109 72.5
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 6.6e-40 167.9 106 73.6
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 8.6e-40 167.5 105 76.2
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 8.6e-40 167.5 109 71.6
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 8.6e-40 167.5 122 65.6
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.9e-39 166.4 109 72.5
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 3.3e-39 165.6 121 61.2
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.2e-39 165.2 116 69.0
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 5.5e-39 164.9 124 66.1
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 7.2e-39 164.5 108 70.4
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 7.2e-39 164.5 107 70.1
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 9.5e-39 164.1 108 68.5
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.2e-38 163.7 109 67.9
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.6e-38 162.2 122 64.8
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 4.7e-38 161.8 117 65.0
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 4.7e-38 161.8 125 60.8
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 6.1e-38 161.4 99 75.8
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.1e-38 161.4 125 64.8
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.4e-37 160.2 125 64.0
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.4e-37 160.2 125 64.0
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.4e-37 160.2 136 60.3
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.8e-37 159.8 107 71.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.3e-37 159.5 108 67.6
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.3e-37 159.5 107 71.0
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 4.0e-37 158.7 129 62.0
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.2e-37 158.3 125 56.8
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 5.2e-37 158.3 114 66.7
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 5.2e-37 158.3 122 67.2
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 8.9e-37 157.5 125 63.2
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.0e-36 156.4 106 69.8
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.0e-36 156.4 106 69.8
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 2.0e-36 156.4 109 65.1
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 3.4e-36 155.6 106 68.9
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 3.4e-36 155.6 118 65.3
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 5.7e-36 154.8 99 71.7
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 5.7e-36 154.8 99 71.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.7e-36 154.8 100 68.0
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 7.5e-36 154.5 123 62.6
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 9.8e-36 154.1 99 71.7
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 9.8e-36 154.1 99 71.7
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.2e-35 152.9 103 68.0
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.8e-35 152.5 117 57.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.8e-35 152.5 117 57.3
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.7e-35 152.1 100 69.0
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.7e-35 152.1 77 89.6
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 6.3e-35 151.4 108 64.8
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.4e-34 150.2 104 66.3
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.2e-33 147.1 101 64.4
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 4.5e-33 145.2 101 69.3
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 5.9e-33 144.8 110 62.7
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 5.0e-32 141.7 109 61.5
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 8.6e-32 141.0 100 69.0
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.3e-31 138.7 117 56.4
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.3e-27 127.1 89 66.3
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 2.2e-27 126.3 115 53.0
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 3.7e-27 125.6 101 57.4
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.9e-26 123.2 108 60.2
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.5e-23 113.6 125 50.4
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 5.6e-23 111.7 105 59.0
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.5e-20 103.6 111 46.8
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 7.5e-20 101.3 55 83.6
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 8.3e-19 97.8 55 80.0
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 7.8e-17 91.3 107 44.9
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 8.1e-14 81.3 65 58.5
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 6.8e-13 78.2 43 83.7
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 8.9e-13 77.8 114 40.4
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-12 77.4 42 85.7
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.1e-06 54.7 30 83.3


User provided reference genes

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