Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1232600 Malus domestica HOM05D003275 ORTHO05D003732 1.4e-40 169.1 82 100.0
MD08G1233100 Malus domestica HOM05D003275 ORTHO05D003732 5.3e-35 150.6 79 92.4
Prupe.1G571000 Prunus persica HOM05D003275 ORTHO05D003732 3.4e-34 147.9 77 93.5
Haze_01710 Corylus avellana HOM05D003275 ORTHO05D003732 7.6e-34 146.7 76 90.8
COL.COLO4_11783 Corchorus olitorius HOM05D003275 ORTHO05D003732 6.4e-33 143.7 77 90.9
TAR381G0360 Trochodendron aralioides HOM05D003275 ORTHO05D003732 6.4e-33 143.7 77 89.6
CSS0025935 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 2.4e-32 141.7 77 89.6
CSS0029284 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 2.4e-32 141.7 77 89.6
ClCG09G013890 Citrullus lanatus HOM05D003275 ORTHO05D003732 2.4e-32 141.7 81 81.5
THA.LOC104812760 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 2.4e-32 141.7 77 90.9
CANSAT11G1659 Cannabis sativa HOM05D003275 ORTHO05D003732 3.2e-32 141.4 77 88.3
CiPaw.05G048000 Carya illinoinensis HOM05D003275 ORTHO05D003732 4.2e-32 141.0 77 88.3
TWI14G0966 Tripterygium wilfordii HOM05D003275 ORTHO05D003732 4.2e-32 141.0 77 89.6
Thecc.02G087700 Theobroma cacao HOM05D003275 ORTHO05D003732 5.4e-32 140.6 77 88.3
RcHm_v2.0_Chr7g0222011 Rosa chinensis HOM05D003275 ORTHO05D003732 7.1e-32 140.2 79 84.8
Gohir.A13G035200 Gossypium hirsutum HOM05D003275 ORTHO05D003732 1.6e-31 139.0 77 88.3
CsaV3_6G037450 Cucumis sativus L. HOM05D003275 ORTHO05D003732 2.1e-31 138.7 79 82.3
PSO170G2758 Papaver somniferum HOM05D003275 ORTHO05D003732 2.1e-31 138.7 78 84.6
Sed0021534 Sechium edule HOM05D003275 ORTHO05D003732 2.1e-31 138.7 79 82.3
AL2G30800 Arabidopsis lyrata HOM05D003275 ORTHO05D003732 2.7e-31 138.3 76 86.8
AT1G71190 Arabidopsis thaliana HOM05D003275 ORTHO05D003732 2.7e-31 138.3 76 86.8
Actinidia26152 Actinidia chinensis HOM05D003275 ORTHO05D003732 4.6e-31 137.5 77 85.7
Aa31LG4G9320 Aethionema arabicum HOM05D003275 ORTHO05D003732 4.6e-31 137.5 77 88.3
CARHR064460 Cardamine hirsuta HOM05D003275 ORTHO05D003732 4.6e-31 137.5 76 86.8
Cpa.g.sc113.53 Carica papaya HOM05D003275 ORTHO05D003732 4.6e-31 137.5 77 84.4
MELO3C014372.2 Cucumis melo HOM05D003275 ORTHO05D003732 4.6e-31 137.5 79 81.0
Thhalv10018974m.g Eutrema salsugineum HOM05D003275 ORTHO05D003732 4.6e-31 137.5 76 86.8
BcaB03g15596 Brassica carinata HOM05D003275 ORTHO05D003732 6.0e-31 137.1 74 85.1
CARHR056290 Cardamine hirsuta HOM05D003275 ORTHO05D003732 6.0e-31 137.1 75 85.3
Ciclev10002064m.g Citrus clementina HOM05D003275 ORTHO05D003732 6.0e-31 137.1 77 87.0
FAN08G1391 Fragaria x ananassa HOM05D003275 ORTHO05D003732 6.0e-31 137.1 79 84.8
FAN18G2082 Fragaria x ananassa HOM05D003275 ORTHO05D003732 6.0e-31 137.1 79 84.8
CAN.G798.6 Capsicum annuum HOM05D003275 ORTHO05D003732 7.8e-31 136.7 76 85.5
Gohir.D13G033600 Gossypium hirsutum HOM05D003275 ORTHO05D003732 7.8e-31 136.7 77 87.0
Gorai.013G038000 Gossypium raimondii HOM05D003275 ORTHO05D003732 7.8e-31 136.7 77 87.0
GSVIVG01022875001 Vitis vinifera HOM05D003275 ORTHO05D003732 7.8e-31 136.7 77 85.7
Zm00001eb362500 Zea mays HOM05D003275 ORTHO05D003732 7.8e-31 136.7 77 84.4
Eucgr.I02729 Eucalyptus grandis HOM05D003275 ORTHO05D003732 1.0e-30 136.3 77 84.4
Hma1.2p1_0217F.1_g092140 Hydrangea macrophylla HOM05D003275 ORTHO05D003732 1.0e-30 136.3 77 87.0
QL02p099154 Quercus lobata HOM05D003275 ORTHO05D003732 1.0e-30 136.3 76 85.5
vmacro19886 Vaccinium macrocarpon HOM05D003275 ORTHO05D003732 1.0e-30 136.3 77 85.7
arahy.Tifrunner.gnm1.ann1.9MB0YU Arachis hypogaea HOM05D003275 ORTHO05D003732 1.3e-30 136.0 77 87.0
Peaxi162Scf00011g00534 Petunia axillaris HOM05D003275 ORTHO05D003732 1.3e-30 136.0 76 84.2
Potri.001G211600 Populus trichocarpa HOM05D003275 ORTHO05D003732 1.3e-30 136.0 76 86.8
Sabra01G0163400 Salix brachista HOM05D003275 ORTHO05D003732 1.3e-30 136.0 77 85.7
arahy.Tifrunner.gnm1.ann1.4G20NP Arachis hypogaea HOM05D003275 ORTHO05D003732 1.7e-30 135.6 77 85.7
Dinv19374 Davidia involucrata HOM05D003275 ORTHO05D003732 1.7e-30 135.6 77 85.7
Duzib132G0935 Durio zibethinus HOM05D003275 ORTHO05D003732 1.7e-30 135.6 77 85.7
Nitab4.5_0000816g0100 Nicotiana tabacum HOM05D003275 ORTHO05D003732 1.7e-30 135.6 76 85.5
Sp5g26350 Schrenkiella parvula HOM05D003275 ORTHO05D003732 1.7e-30 135.6 76 84.2
BcaB03g14876 Brassica carinata HOM05D003275 ORTHO05D003732 2.3e-30 135.2 73 84.9
C06p35730 Brassica napus HOM05D000145 ORTHO05D003732 3.0e-30 134.8 76 82.9
BolC6t38696H Brassica oleracea HOM05D000145 ORTHO05D003732 3.0e-30 134.8 76 82.9
Carub.0002s1807 Capsella rubella HOM05D003275 ORTHO05D003732 3.0e-30 134.8 73 87.7
PSO528G0003 Papaver somniferum HOM05D003275 ORTHO05D003732 3.0e-30 134.8 78 82.1
PGR142G1307 Punica granatum HOM05D003275 ORTHO05D003732 3.0e-30 134.8 77 83.1
Aqoxy6G00228 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 3.9e-30 134.4 77 81.8
Nitab4.5_0007514g0030 Nicotiana tabacum HOM05D003275 ORTHO05D003732 3.9e-30 134.4 76 84.2
ATR0584G052 Amborella trichopoda HOM05D003275 ORTHO05D003732 5.1e-30 134.0 77 83.1
BcaC08g45789 Brassica carinata HOM05D000145 ORTHO05D003732 5.1e-30 134.0 76 82.9
A07p30830 Brassica napus HOM05D000145 ORTHO05D003732 5.1e-30 134.0 76 82.9
BraA07t30720Z Brassica rapa HOM05D000145 ORTHO05D003732 5.1e-30 134.0 76 82.9
PGR044G2065 Punica granatum HOM05D003275 ORTHO05D003732 5.1e-30 134.0 80 77.5
VMungo1127G2090 Vigna mungo HOM05D003275 ORTHO05D003732 5.1e-30 134.0 77 85.7
Solyc01g104080.4 Solanum lycopersicum HOM05D003275 ORTHO05D003732 8.7e-30 133.3 76 82.9
Sopen01g046490 Solanum pennellii HOM05D003275 ORTHO05D003732 8.7e-30 133.3 76 82.9
CSS0049502 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 1.1e-29 132.9 77 85.7
PGSC0003DMG400023796 Solanum tuberosum HOM05D003275 ORTHO05D003732 1.1e-29 132.9 76 82.9
THA.LOC104798496 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 1.5e-29 132.5 77 80.5
Atru.chr4.1466 Acer truncatum HOM05D003275 ORTHO05D003732 1.9e-29 132.1 77 81.8
Os01g0962200 Oryza sativa ssp. japonica HOM05D003275 ORTHO05D003732 1.9e-29 132.1 76 84.2
Medtr2g006770 Medicago truncatula HOM05D003275 ORTHO05D003732 2.5e-29 131.7 79 81.0
Rhsim05G0119500 Rhododendron simsii HOM05D003275 ORTHO05D003732 2.5e-29 131.7 77 84.4
Lalb_Chr18g0060911 Lupinus albus HOM05D003275 ORTHO05D003732 3.3e-29 131.3 77 85.7
Phvul.011G155400 Phaseolus vulgaris HOM05D003275 ORTHO05D003732 4.3e-29 131.0 77 81.8
DCAR_006703 Daucus carota HOM05D003275 ORTHO05D003732 5.6e-29 130.6 79 78.5
ECA240G3384 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.6e-29 130.6 79 78.5
Lj6g0004299 Lotus japonicus HOM05D003275 ORTHO05D003732 5.6e-29 130.6 76 84.2
SGA_v2.0_scaffold110G31330 Striga asiatica HOM05D003275 ORTHO05D003732 5.6e-29 130.6 79 81.0
Manes.07G017000 Manihot esculenta HOM05D003275 ORTHO05D003732 7.3e-29 130.2 76 81.6
HanXRQChr03g0073631 Helianthus annuus HOM05D003275 ORTHO05D003732 9.6e-29 129.8 79 78.5
Oeu008899.2 Olea europaea HOM05D003275 ORTHO05D003732 9.6e-29 129.8 79 81.0
Migut.B00827 Erythranthe guttata HOM05D003275 ORTHO05D003732 1.6e-28 129.0 79 75.9
CSS0010820 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 2.1e-28 128.6 73 84.9
CSS0034523 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 2.1e-28 128.6 73 84.9
Glyma.08G186900 Glycine max HOM05D003275 ORTHO05D003732 2.1e-28 128.6 77 83.1
Psat1g221280 Pisum sativum HOM05D003275 ORTHO05D003732 2.1e-28 128.6 79 79.7
TPR.G2088 Trifolium pratense HOM05D003275 ORTHO05D003732 2.1e-28 128.6 79 78.5
MSTRG.16515 Avicennia marina HOM05D003275 ORTHO05D003732 4.8e-28 127.5 77 81.8
EL10Ac6g14059 Beta vulgaris HOM05D003275 ORTHO05D003732 6.2e-28 127.1 78 80.8
Ca_00066_v3 Cicer arietinum L. HOM05D003275 ORTHO05D003732 6.2e-28 127.1 77 79.2
Cc02_g22610 Coffea canephora HOM05D003275 ORTHO05D003732 6.2e-28 127.1 73 82.2
Glyma.15G046100 Glycine max HOM05D003275 ORTHO05D003732 8.1e-28 126.7 77 81.8
Lsat_1_v5_gn_9_118660 Lactuca sativa HOM05D003275 ORTHO05D003732 3.1e-27 124.8 79 78.5
Nn5g28307 Nelumbo nucifera HOM05D003275 ORTHO05D003732 4.0e-27 124.4 77 77.9
AUR62014227 Chenopodium quinoa HOM05D003275 ORTHO05D003732 1.2e-26 122.9 76 77.6
Sc07g0004860 Simmondsia chinensis HOM05D003275 ORTHO05D003732 2.0e-26 122.1 77 77.9
HPP92_011386 Vanilla planifolia HOM05D003275 ORTHO05D003732 2.6e-26 121.7 73 78.1
AUR62041115 Chenopodium quinoa HOM05D003275 ORTHO05D003732 3.4e-26 121.3 76 76.3
CDE06G1849 Ceratophyllum demersum HOM05D003275 ORTHO05D003732 7.6e-26 120.2 79 72.2
SEGI_25464 Sequoiadendron giganteum HOM05D003275 ORTHO05D003732 7.6e-26 120.2 76 73.7
Ah.03g137170 Amaranthus hybridus HOM05D003275 ORTHO05D003732 4.9e-25 117.5 73 76.7
Nn7g38013 Nelumbo nucifera HOM05D003275 ORTHO05D003732 3.2e-24 114.8 73 75.3
Glyma.08G131300 Glycine max HOM05D003275 ORTHO05D003732 1.8e-22 109.0 73 71.2
Phvul.002G259100 Phaseolus vulgaris HOM05D003275 ORTHO05D003732 3.9e-22 107.8 69 76.8
Ca_17783_v3 Cicer arietinum L. HOM05D003275 ORTHO05D003732 6.7e-22 107.1 73 71.2
VMungo0251G2850 Vigna mungo HOM05D003275 ORTHO05D003732 2.5e-21 105.1 73 71.2
Lj4g0028052 Lotus japonicus HOM05D003275 ORTHO05D003732 3.3e-21 104.8 76 65.8
COL.COLO4_11784 Corchorus olitorius HOM05D003275 ORTHO05D003732 9.6e-21 103.2 77 66.2
Psat7g059520 Pisum sativum HOM05D003275 ORTHO05D003732 9.6e-21 103.2 67 74.6
TPR.G6212 Trifolium pratense HOM05D003275 ORTHO05D003732 4.8e-20 100.9 67 71.6
Lalb_Chr07g0185451 Lupinus albus HOM05D003275 ORTHO05D003732 1.4e-19 99.4 70 68.6
Medtr8g089715 Medicago truncatula HOM05D003275 ORTHO05D003732 1.4e-19 99.4 67 70.1
SMO339G0029 Selaginella moellendorffii HOM05D003275 ORTHO05D003732 1.4e-19 99.4 80 57.5
Mapoly0016s0101 Marchantia polymorpha HOM05D003275 ORTHO05D003732 3.1e-19 98.2 77 62.3
Pp3c3_10770 Physcomitrium patens HOM05D003275 ORTHO05D003732 3.1e-19 98.2 77 64.9
MBI01_g01261_MAGBIO Magnolia biondii HOM05D003275 ORTHO05D003732 5.8e-18 94.0 75 56.0
ATR0026G038 Amborella trichopoda HOM05D003275 ORTHO05D003732 1.3e-17 92.8 70 58.6
Nn5g28309 Nelumbo nucifera HOM05D003275 ORTHO05D003732 1.3e-17 92.8 80 57.5
AagrBONN_evm.TU.Sc2ySwM_117.3889 Anthoceros agrestis HOM05D003275 ORTHO05D003732 1.7e-17 92.4 72 59.7
SMO356G0484 Selaginella moellendorffii HOM05D003275 ORTHO05D003732 2.9e-17 91.7 73 58.9
Eucgr.C00652 Eucalyptus grandis HOM05D003275 ORTHO05D003732 1.1e-16 89.7 75 56.0
CBR_g3553 Chara braunii HOM05D003275 ORTHO05D003732 1.4e-16 89.4 73 56.2
Atru.chr7.1081 Acer truncatum HOM05D003275 ORTHO05D003732 1.9e-16 89.0 75 52.0
Nn6g35489 Nelumbo nucifera HOM05D003275 ORTHO05D003732 1.9e-16 89.0 74 52.7
MD08G1062700 Malus domestica HOM05D003275 ORTHO05D003732 2.5e-16 88.6 73 54.8
Lj9C304T9 Lonicera japonica HOM05D003275 ORTHO05D003732 9.3e-16 86.7 85 56.5
Sabra06G0177100 Salix brachista HOM05D003275 ORTHO05D003732 9.3e-16 86.7 73 53.4
Ciclev10009178m.g Citrus clementina HOM05D003275 ORTHO05D003732 1.6e-15 85.9 73 54.8
Manes.03G048000 Manihot esculenta HOM05D003275 ORTHO05D003732 1.6e-15 85.9 76 50.0
Dinv23426 Davidia involucrata HOM05D003275 ORTHO05D003732 3.5e-15 84.7 47 83.0
Potri.006G228700 Populus trichocarpa HOM05D003275 ORTHO05D003732 3.5e-15 84.7 73 52.1
MD15G1059000 Malus domestica HOM05D003275 ORTHO05D003732 4.6e-15 84.3 73 53.4
Nn8g38852 Nelumbo nucifera HOM05D003275 ORTHO05D003732 4.6e-15 84.3 73 50.7
TAR383G0517 Trochodendron aralioides HOM05D003275 ORTHO05D003732 6.0e-15 84.0 73 53.4
HPP92_000672 Vanilla planifolia HOM05D003275 ORTHO05D003732 6.0e-15 84.0 73 47.9
PSO832G1640 Papaver somniferum HOM05D003275 ORTHO05D003732 7.9e-15 83.6 73 50.7
CANSAT25G2318 Cannabis sativa HOM05D003275 ORTHO05D003732 1.3e-14 82.8 73 50.7
THA.LOC104799163 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 3.0e-14 81.6 73 47.9
Gorai.010G100200 Gossypium raimondii HOM05D003275 ORTHO05D003732 5.1e-14 80.9 74 48.6
AT5G11870 Arabidopsis thaliana HOM05D003275 ORTHO05D003732 1.1e-13 79.7 73 47.9
FvH4_2g31810 Fragaria vesca HOM05D003275 ORTHO05D003732 1.9e-13 79.0 73 49.3
Sp6g31730 Schrenkiella parvula HOM05D003275 ORTHO05D003732 1.9e-13 79.0 73 47.9
GSVIVG01035399001 Vitis vinifera HOM05D003275 ORTHO05D003732 1.9e-13 79.0 75 48.0
Thhalv10014390m.g Eutrema salsugineum HOM05D003275 ORTHO05D003732 4.3e-13 77.8 73 47.9
Gohir.A06G087400 Gossypium hirsutum HOM05D003275 ORTHO05D003732 4.3e-13 77.8 68 50.0
Gohir.D06G086800 Gossypium hirsutum HOM05D003275 ORTHO05D003732 5.7e-13 77.4 68 50.0
RcHm_v2.0_Chr6g0311011 Rosa chinensis HOM05D003275 ORTHO05D003732 5.7e-13 77.4 73 47.9
Thecc.09G054400 Theobroma cacao HOM05D003275 ORTHO05D003732 5.7e-13 77.4 73 47.9
Carub.0006s1040 Capsella rubella HOM05D003275 ORTHO05D003732 7.4e-13 77.0 73 46.6
Duzib168G2080 Durio zibethinus HOM05D003275 ORTHO05D003732 7.4e-13 77.0 73 45.2
AagrBONN_evm.TU.Sc2ySwM_228.4826 Anthoceros agrestis HOM05D003275 ORTHO05D003732 9.6e-13 76.6 69 55.1
AL6G22630 Arabidopsis lyrata HOM05D003275 ORTHO05D003732 2.8e-12 75.1 73 43.8
Haze_18178 Corylus avellana HOM05D003275 ORTHO05D003732 3.7e-12 74.7 73 49.3
CARHR201290 Cardamine hirsuta HOM05D003275 ORTHO05D003732 8.2e-12 73.6 73 45.2
Lj1g0012846 Lotus japonicus HOM05D003275 ORTHO05D003732 8.2e-12 73.6 66 45.5
Haze_18185 Corylus avellana HOM05D003275 ORTHO05D003732 1.1e-11 73.2 73 47.9
Glyma.04G051500 Glycine max HOM05D003275 ORTHO05D003732 1.1e-11 73.2 75 42.7
QL02p001118 Quercus lobata HOM05D003275 ORTHO05D003732 1.4e-11 72.8 64 51.6
TWI34G1634 Tripterygium wilfordii HOM05D003275 ORTHO05D003732 1.8e-11 72.4 73 45.2
CiPaw.15G038500 Carya illinoinensis HOM05D003275 ORTHO05D003732 3.1e-11 71.6 64 51.6
Aa31LG3G15330 Aethionema arabicum HOM05D003275 ORTHO05D003732 4.0e-11 71.2 69 47.8
Glyma.06G052300 Glycine max HOM05D003275 ORTHO05D003732 4.0e-11 71.2 75 42.7
PGR031G0256 Punica granatum HOM05D003275 ORTHO05D003732 4.0e-11 71.2 86 43.0
arahy.Tifrunner.gnm1.ann1.32MGU6 Arachis hypogaea HOM05D003275 ORTHO05D003732 1.2e-10 69.7 75 42.7
Phvul.009G077800 Phaseolus vulgaris HOM05D003275 ORTHO05D003732 1.2e-10 69.7 75 41.3
VMungo1309G2424 Vigna mungo HOM05D003275 ORTHO05D003732 4.5e-10 67.8 74 40.5
Lalb_Chr08g0245071 Lupinus albus HOM05D003275 ORTHO05D003732 5.8e-10 67.4 75 42.7
Lalb_Chr14g0366311 Lupinus albus HOM05D003275 ORTHO05D003732 5.8e-10 67.4 64 43.8
TPR.G13175 Trifolium pratense HOM05D003275 ORTHO05D003732 5.8e-10 67.4 67 43.3
A10p25900 Brassica napus HOM05D003275 ORTHO05D003732 1.0e-09 66.6 69 43.5
A10p25910 Brassica napus HOM05D003275 ORTHO05D003732 1.0e-09 66.6 69 43.5
BraA10t44653Z Brassica rapa HOM05D003275 ORTHO05D003732 1.0e-09 66.6 69 43.5
BcaC04g19190 Brassica carinata HOM05D003275 ORTHO05D003732 2.2e-09 65.5 69 42.0
C09p64990 Brassica napus HOM05D003275 ORTHO05D003732 2.2e-09 65.5 69 42.0
BolC9t59327H Brassica oleracea HOM05D003275 ORTHO05D003732 2.2e-09 65.5 69 42.0
Psat0s4497g0080 Pisum sativum HOM05D003275 ORTHO05D003732 2.9e-09 65.1 66 43.9
Psat0ss1279g0400 Pisum sativum HOM05D003275 ORTHO05D003732 5.0e-09 64.3 66 40.9
Medtr1g016080 Medicago truncatula HOM05D003275 ORTHO05D003732 6.5e-09 63.9 66 42.4
arahy.Tifrunner.gnm1.ann1.WQ6HRD Arachis hypogaea HOM05D003275 ORTHO05D003732 1.1e-08 63.2 81 39.5
FAN15G3499 Fragaria x ananassa HOM05D003275 ORTHO05D003732 1.1e-08 63.2 96 35.4
Medtr3g104420 Medicago truncatula HOM05D003275 ORTHO05D003732 2.1e-07 58.9 66 39.4
TPR.G40725 Trifolium pratense HOM05D003275 ORTHO05D003732 4.6e-07 57.8 59 42.4
Lj5g0008225 Lotus japonicus HOM05D003275 ORTHO05D003732 1.3e-06 56.2 64 39.1


User provided reference genes

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