Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1208300 Malus domestica HOM05D002920 ORTHO05D003118 9.2e-287 989.6 512 100.0
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 6.9e-226 787.3 531 83.2
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 1.2e-206 723.4 532 77.3
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 1.9e-199 699.5 532 75.4
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 2.0e-193 679.5 535 73.3
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 1.6e-190 669.8 535 71.4
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 4.7e-190 668.3 535 71.4
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 1.8e-189 666.4 535 71.2
FAN13G0555 Fragaria x ananassa HOM05D002920 ORTHO05D003118 4.0e-189 665.2 535 71.2
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 8.0e-174 614.4 528 68.8
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 1.4e-170 603.6 528 68.4
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 1.2e-166 590.5 529 66.7
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 3.6e-166 589.0 526 67.7
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 1.8e-165 586.6 525 66.3
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 1.8e-165 586.6 530 66.8
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 3.1e-165 585.9 530 66.6
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 1.2e-164 583.9 537 65.4
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 1.2e-164 583.9 525 66.1
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 5.8e-164 581.6 527 67.4
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 9.8e-164 580.9 532 66.4
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 9.8e-164 580.9 533 66.4
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 9.8e-164 580.9 536 65.5
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 2.9e-163 579.3 528 65.5
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 6.4e-163 578.2 526 66.2
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 2.4e-162 576.2 534 66.3
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 4.1e-162 575.5 529 66.5
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 1.2e-161 573.9 537 64.8
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 3.0e-160 569.3 530 65.1
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 6.6e-160 568.2 536 64.6
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 5.6e-159 565.1 532 65.6
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 9.5e-159 564.3 530 64.5
CSS0008058 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 2.1e-158 563.1 534 64.0
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 2.3e-157 559.7 538 63.9
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 5.2e-157 558.5 537 62.9
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 5.2e-157 558.5 536 64.7
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 6.8e-157 558.1 529 66.2
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 2.0e-156 556.6 533 65.7
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 2.0e-156 556.6 535 64.3
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 2.9e-155 552.7 534 64.4
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 3.7e-155 552.4 521 64.5
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 8.3e-155 551.2 530 64.3
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 8.3e-155 551.2 529 64.1
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 7.1e-154 548.1 533 64.2
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 2.7e-153 546.2 525 64.6
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 3.5e-153 545.8 519 64.5
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 6.0e-153 545.0 535 61.5
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.9e-151 540.0 529 64.3
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 2.8e-150 536.2 520 62.5
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 4.7e-150 535.4 528 61.9
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 3.1e-149 532.7 535 60.7
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 1.5e-148 530.4 553 60.9
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 2.0e-148 530.0 538 61.2
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 2.6e-148 529.6 523 61.6
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 2.6e-148 529.6 513 63.9
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 3.4e-148 529.3 402 74.1
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 4.4e-148 528.9 523 62.3
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 4.4e-148 528.9 525 61.9
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 7.6e-148 528.1 517 62.7
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 3.8e-147 525.8 537 61.8
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 1.1e-146 524.2 536 60.8
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 2.4e-146 523.1 518 64.5
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 7.1e-146 521.5 535 60.0
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.6e-145 520.4 523 61.8
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 2.1e-145 520.0 526 60.5
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.1e-145 520.0 528 60.0
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 4.6e-145 518.8 543 58.9
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 4.6e-145 518.8 535 59.8
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 6.0e-145 518.5 525 60.8
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 3.0e-144 516.2 541 59.3
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 5.1e-144 515.4 525 61.7
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 1.5e-143 513.8 524 60.1
QL09p018203 Quercus lobata HOM05D002920 ORTHO05D003118 2.5e-143 513.1 462 67.7
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 9.6e-143 511.1 535 60.2
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 9.6e-143 511.1 522 60.7
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 3.6e-142 509.2 530 60.4
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 4.0e-141 505.8 535 58.7
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 9.9e-140 501.1 513 60.2
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 1.3e-139 500.7 535 58.3
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 1.7e-139 500.4 536 59.0
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 4.9e-139 498.8 562 56.2
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.4e-138 497.3 513 60.0
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.9e-138 496.9 541 58.6
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 1.6e-137 493.8 535 57.0
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 6.0e-137 491.9 535 58.9
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 6.0e-137 491.9 491 59.9
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 1.3e-136 490.7 523 58.9
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 1.3e-136 490.7 523 58.9
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 1.7e-136 490.3 523 58.3
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 1.5e-135 487.3 540 57.6
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 1.9e-135 486.9 523 57.6
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 2.5e-135 486.5 559 55.3
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 1.6e-134 483.8 535 57.6
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 2.1e-134 483.4 523 58.3
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 1.1e-133 481.1 523 58.3
C01p35900 Brassica napus HOM05D002920 ORTHO05D003118 1.1e-133 481.1 523 58.3
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 1.1e-133 481.1 523 58.3
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 1.4e-133 480.7 523 58.1
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 2.4e-133 479.9 516 57.4
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 6.9e-133 478.4 543 56.7
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 1.2e-132 477.6 531 56.5
Psat2g064120 Pisum sativum HOM05D002920 ORTHO05D003118 7.6e-132 474.9 529 56.3
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 8.4e-131 471.5 522 57.1
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 1.1e-130 471.1 501 57.3
PGSC0003DMG400002051 Solanum tuberosum HOM05D002920 ORTHO05D003118 1.6e-129 467.2 514 56.8
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 2.7e-129 466.5 533 55.7
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 6.0e-129 465.3 510 56.3
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 1.8e-128 463.8 510 56.3
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 3.1e-125 453.0 519 55.7
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 5.3e-125 452.2 515 56.1
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 9.0e-125 451.4 523 55.6
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.5e-124 450.7 523 55.4
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 3.4e-124 449.5 526 56.1
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 2.7e-121 439.9 535 53.5
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 3.5e-121 439.5 528 54.0
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 5.1e-120 435.6 521 53.2
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 8.1e-118 428.3 514 51.9
CDE07G0298 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 1.8e-117 427.2 545 52.7
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.8e-117 427.2 509 51.9
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 2.4e-117 426.8 536 51.1
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 4.0e-117 426.0 510 52.4
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 1.5e-116 424.1 512 51.6
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 2.6e-116 423.3 513 52.2
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 4.5e-116 422.5 509 51.9
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 7.6e-116 421.8 509 55.0
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 2.9e-115 419.9 515 52.6
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 2.9e-115 419.9 524 50.8
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 6.5e-115 418.7 533 51.6
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 1.1e-114 417.9 515 52.6
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 1.1e-114 417.9 521 52.0
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 7.1e-114 415.2 521 52.0
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 7.1e-114 415.2 512 50.6
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 4.6e-113 412.5 525 49.9
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 3.3e-111 406.4 455 56.7
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 7.4e-111 405.2 541 49.9
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 1.0e-107 394.8 541 50.5
MD08G1201600 Malus domestica HOM05D002920 ORTHO05D003118 3.8e-107 392.9 255 82.7
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 1.1e-106 391.3 511 48.7
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.9e-106 390.6 521 52.2
Oeu038176.1 Olea europaea HOM05D002920 ORTHO05D003118 1.6e-105 387.5 407 60.0
Lsat_1_v5_gn_9_80681 Lactuca sativa HOM05D002920 ORTHO05D003118 3.0e-104 383.3 478 50.4
Haze_22479 Corylus avellana HOM05D002920 ORTHO05D003118 2.2e-102 377.1 340 65.9
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.1e-98 364.8 514 46.3
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 7.2e-98 362.1 509 49.9
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 2.1e-97 360.5 502 46.8
Lsat_1_v5_gn_7_70960 Lactuca sativa HOM05D002920 ORTHO05D003118 2.7e-97 360.1 503 48.7
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 1.3e-94 351.3 533 49.2
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 1.7e-91 340.9 524 45.8
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 4.2e-90 336.3 523 44.9
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 7.2e-90 335.5 524 44.7
Ca_05459_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 7.9e-89 332.0 421 51.5
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 3.0e-88 330.1 470 47.0
vmacro21352 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 9.7e-87 325.1 437 48.3
CANSAT25G0689 Cannabis sativa HOM05D002920 ORTHO05D003118 5.0e-83 312.8 227 74.0
SEGI_15502 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 2.6e-79 300.4 312 57.7
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 4.4e-79 299.7 351 55.8
vmacro04641 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 4.4e-79 299.7 450 46.7
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 5.7e-79 299.3 471 44.4
Cpa.g.sc21.36 Carica papaya HOM05D002920 ORTHO05D003118 1.2e-73 281.6 289 63.0
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 6.3e-70 269.2 524 42.6
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 7.7e-68 262.3 556 39.6
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 6.5e-67 259.2 537 40.4
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 2.3e-64 250.8 518 39.0
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 1.3e-59 235.0 449 41.6
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 1.3e-59 235.0 449 41.6
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 1.1e-58 231.9 321 48.3
PSO094G0001 Papaver somniferum HOM05D002920 ORTHO05D003118 4.3e-50 203.4 177 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 2.6e-47 194.1 445 35.5
Os03g0353701 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 9.5e-34 149.1 162 52.5
CAN.G375.38 Capsicum annuum HOM05D002920 ORTHO05D003118 3.1e-32 144.1 293 38.6
CAN.G375.37 Capsicum annuum HOM05D002920 ORTHO05D003118 1.3e-30 138.7 203 47.8
Hund17270 Selenicereus undatus HOM05D002920 ORTHO05D003118 3.2e-29 134.0 129 59.7
Hund17271 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.1e-28 131.3 161 51.6
Hund17269 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.4e-24 117.9 154 50.0
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 5.8e-23 113.2 61 88.5
SEGI_38853 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 1.4e-21 108.6 71 74.6
Psat7g143040 Pisum sativum HOM05D002920 ORTHO05D003118 3.0e-19 100.9 73 71.2
CANSAT80G1718 Cannabis sativa HOM05D002920 ORTHO05D003118 4.0e-16 90.5 49 85.7
CBR_g40341 Chara braunii HOM05D002920 ORTHO05D003118 5.8e-15 86.7 494 25.9
Oeu038175.1 Olea europaea HOM05D002920 ORTHO05D010194 1.1e-13 82.4 50 82.0
Os03g0681300 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 7.6e-07 59.7 65 61.5


User provided reference genes

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