Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 0.0e+00 1655.2 929 100.0
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 0.0e+00 1437.9 929 86.7
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 0.0e+00 1194.9 931 72.7
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 0.0e+00 1161.0 969 71.6
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 0.0e+00 1146.3 958 68.4
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1144.4 950 69.4
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1127.9 954 67.6
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1124.4 954 67.3
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 0.0e+00 1102.0 977 68.8
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 2.4e-293 1012.3 941 64.5
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 7.7e-292 1007.3 854 66.0
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 1.5e-287 993.0 797 67.1
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 1.9e-282 976.1 949 60.9
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.4e-277 959.9 957 60.7
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 2.4e-277 959.1 923 62.8
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 4.1e-277 958.4 960 60.8
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 1.2e-276 956.8 948 58.9
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 4.5e-276 954.9 839 62.8
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 5.6e-274 948.0 940 58.6
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 6.1e-273 944.5 942 60.6
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 7.8e-268 927.5 843 61.7
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 5.0e-267 924.9 800 63.2
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 8.9e-264 914.1 847 61.4
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 1.5e-263 913.3 847 59.6
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 2.2e-262 909.4 856 59.7
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 4.9e-262 908.3 829 60.9
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 1.9e-261 906.4 949 57.0
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 7.0e-261 904.4 934 55.8
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 1.2e-260 903.7 954 56.5
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 2.7e-260 902.5 842 61.4
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 2.7e-260 902.5 852 60.2
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 3.5e-260 902.1 843 59.8
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 1.5e-258 896.7 940 56.2
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 1.5e-258 896.7 951 55.9
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 6.2e-257 891.3 936 55.9
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 3.4e-255 885.6 960 55.1
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 2.2e-254 882.9 941 56.3
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 4.1e-253 878.6 869 58.2
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 2.1e-252 876.3 857 58.8
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 3.5e-252 875.5 944 55.0
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 6.0e-252 874.8 806 61.5
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 3.0e-251 872.5 769 61.8
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 2.5e-250 869.4 943 57.6
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 4.3e-250 868.6 934 55.2
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 5.6e-250 868.2 938 55.2
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 7.3e-250 867.8 950 54.7
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 1.6e-249 866.7 857 57.6
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 9.9e-247 857.4 852 58.0
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 1.9e-245 853.2 847 56.9
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 1.0e-243 847.4 941 53.9
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 1.0e-243 847.4 852 57.6
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 3.4e-239 832.4 835 56.9
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 6.4e-238 828.2 812 57.6
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 4.2e-237 825.5 952 57.2
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 7.1e-237 824.7 831 55.5
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 1.6e-236 823.5 835 56.0
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 3.5e-236 822.4 910 52.5
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.9e-234 816.6 870 54.3
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 2.5e-234 816.2 838 56.1
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 1.3e-233 813.9 855 55.3
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 1.6e-233 813.5 845 55.1
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 2.1e-233 813.1 849 54.9
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 3.6e-233 812.4 808 56.8
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 6.2e-233 811.6 954 51.6
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 1.1e-232 810.8 808 57.4
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 5.8e-231 805.1 809 56.0
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 9.9e-231 804.3 880 52.8
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 1.3e-230 803.9 810 55.8
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 1.9e-229 800.0 869 54.4
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 7.1e-229 798.1 809 56.7
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 3.5e-228 795.8 820 54.3
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 7.4e-226 788.1 828 53.9
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 9.9e-223 777.7 945 49.4
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 4.9e-222 775.4 920 54.6
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 4.9e-222 775.4 785 56.6
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 7.9e-220 768.1 763 56.6
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 5.1e-219 765.4 791 55.0
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 6.7e-219 765.0 824 52.2
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 6.7e-219 765.0 869 51.2
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 9.6e-218 761.1 814 53.9
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 7.1e-213 745.0 809 54.6
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.4e-208 729.9 937 48.8
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 1.8e-203 713.8 776 52.7
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 3.7e-201 706.1 720 60.3
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 6.5e-198 695.3 716 53.4
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 6.9e-192 675.2 409 88.0
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 1.0e-187 661.4 826 48.3
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 2.6e-186 656.8 650 56.9
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 1.4e-184 651.0 826 47.6
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 5.0e-182 642.5 738 51.9
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 5.9e-175 619.0 935 47.0
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 6.5e-174 615.5 875 49.6
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 5.4e-168 595.9 712 50.8
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 3.0e-163 580.1 583 55.1
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 4.0e-163 579.7 443 67.7
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 4.9e-161 572.8 502 63.5
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 8.6e-158 562.0 488 62.5
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 2.1e-156 557.4 827 44.6
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 3.5e-151 540.0 854 42.0
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 1.0e-150 538.5 408 67.9
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 5.8e-138 496.1 576 51.4
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 2.1e-103 381.3 699 36.1
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 5.9e-90 336.7 419 49.6
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 1.6e-87 328.6 222 76.6
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 1.1e-83 315.8 638 33.2
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 1.1e-83 315.8 476 42.4
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 7.9e-79 299.7 1021 28.9
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 2.0e-77 295.0 800 31.4
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 2.2e-76 291.6 702 31.6
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 4.8e-76 290.4 223 73.1
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 1.4e-54 219.2 290 46.2
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 3.0e-54 218.0 150 72.7
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 2.3e-49 201.8 294 49.0
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 3.4e-37 161.4 161 57.8
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 1.9e-32 145.6 219 42.0
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 2.7e-26 125.2 139 59.0
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 5.8e-21 107.5 63 74.6
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 2.7e-18 98.6 86 60.5
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 6.0e-18 97.4 793 24.6
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 5.1e-17 94.4 97 56.7
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.9e-16 92.4 147 40.1
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 3.2e-11 75.1 558 20.3
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 3.0e-09 68.6 54 64.8
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 3.0e-09 68.6 54 64.8
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 3.1e-06 58.5 121 36.4
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 4.0e-06 58.2 42 64.3


User provided reference genes

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