Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 2.0e-104 382.5 203 100.0
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 2.1e-85 319.3 203 86.7
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 4.0e-68 261.9 203 71.4
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.7e-55 219.9 198 61.1
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 2.1e-53 213.0 201 59.7
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 3.6e-53 212.2 199 59.8
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 4.8e-53 211.8 203 59.1
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 6.2e-53 211.5 196 62.2
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 8.1e-53 211.1 203 59.1
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 5.3e-52 208.4 195 59.0
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.2e-51 207.2 198 57.1
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 4.4e-51 205.3 199 57.3
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 9.9e-51 204.1 198 57.1
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 1.7e-50 203.4 197 60.4
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 3.8e-50 202.2 200 58.0
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 6.4e-50 201.4 203 57.6
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 6.0e-48 194.9 200 57.5
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 2.3e-47 193.0 198 58.1
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 6.6e-47 191.4 200 56.5
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 8.7e-47 191.0 198 57.1
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 1.5e-46 190.3 198 55.6
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 1.5e-46 190.3 198 57.6
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 1.5e-46 190.3 198 55.6
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 1.9e-46 189.9 198 56.6
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 3.3e-46 189.1 197 55.3
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 3.3e-46 189.1 198 53.0
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 4.3e-46 188.7 197 55.8
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 4.3e-46 188.7 203 54.7
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 4.3e-46 188.7 198 53.0
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 7.3e-46 188.0 196 53.6
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 9.6e-46 187.6 199 56.3
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 9.6e-46 187.6 198 53.0
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 9.6e-46 187.6 198 56.6
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 1.3e-45 187.2 199 54.3
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 1.6e-45 186.8 198 54.5
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 2.1e-45 186.4 200 56.5
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 2.8e-45 186.0 199 54.8
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 3.6e-45 185.7 203 55.7
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 4.8e-45 185.3 195 55.4
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 1.4e-44 183.7 202 52.0
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 4.0e-44 182.2 187 56.7
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 4.0e-44 182.2 202 55.0
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 5.3e-44 181.8 195 51.8
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 9.0e-44 181.0 204 54.9
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 9.0e-44 181.0 200 54.5
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 1.2e-43 180.6 202 53.5
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 1.2e-43 180.6 198 52.5
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 1.5e-43 180.3 199 51.8
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 5.8e-43 178.3 198 52.5
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 2.9e-42 176.0 197 52.8
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 3.8e-42 175.6 198 53.5
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 4.9e-42 175.3 203 51.2
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 1.1e-41 174.1 197 51.8
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 1.4e-41 173.7 204 51.5
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 2.4e-41 172.9 202 52.5
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 3.2e-41 172.6 205 51.2
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 5.5e-41 171.8 202 54.0
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 9.3e-41 171.0 161 57.1
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 9.3e-41 171.0 198 50.5
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 1.2e-40 170.6 201 52.2
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 1.2e-40 170.6 196 50.5
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 2.7e-40 169.5 201 53.7
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 3.5e-40 169.1 202 50.0
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 3.5e-40 169.1 196 50.0
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 4.6e-40 168.7 195 49.2
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 7.9e-40 167.9 202 49.5
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 1.0e-39 167.5 202 49.5
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 1.0e-39 167.5 202 49.5
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 1.0e-39 167.5 202 50.0
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 3.0e-39 166.0 202 49.5
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 8.7e-39 164.5 203 49.3
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 2.5e-38 162.9 166 54.8
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 2.5e-38 162.9 201 47.8
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 3.3e-38 162.5 202 51.5
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 1.3e-37 160.6 155 60.6
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 1.6e-37 160.2 198 50.5
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 1.6e-37 160.2 196 48.5
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 1.6e-37 160.2 199 49.2
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 1.6e-37 160.2 196 51.0
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 2.1e-37 159.8 241 46.1
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 2.1e-37 159.8 200 48.5
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 2.1e-37 159.8 284 40.5
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 2.1e-37 159.8 199 50.8
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 2.8e-37 159.5 205 49.8
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 2.8e-37 159.5 201 49.3
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 1.8e-36 156.8 200 47.5
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 3.1e-36 156.0 198 48.5
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 4.0e-36 155.6 249 41.4
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 6.9e-36 154.8 197 46.7
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 1.2e-35 154.1 205 47.3
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 1.2e-35 154.1 252 41.7
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 5.8e-35 151.8 210 48.6
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 7.6e-35 151.4 229 43.7
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 7.6e-35 151.4 198 47.5
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 6.5e-34 148.3 198 48.5
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 8.4e-34 147.9 157 52.9
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 1.4e-33 147.1 185 52.4
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 7.1e-33 144.8 204 45.6
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 8.2e-21 104.8 198 36.4
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 3.1e-20 102.8 146 47.3
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 2.2e-18 96.7 197 37.1
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 7.9e-16 88.2 209 31.1
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.4e-15 87.4 121 42.1
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 4.1e-12 75.9 85 48.2
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.5e-11 73.9 83 49.4
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 3.4e-11 72.8 81 49.4
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.0e-10 71.2 201 34.8
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.2e-10 70.1 153 35.3
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 6.5e-10 68.6 78 48.7
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 2.7e-08 63.2 102 39.2
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.0e-07 61.2 59 54.2
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.4e-07 60.8 42 64.3
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 3.0e-07 59.7 56 57.1
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 8.8e-07 58.2 75 42.7
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.5e-06 57.4 78 39.7
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.0e-06 57.0 77 39.0


User provided reference genes

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