Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 0.0e+00 1090.5 544 100.0
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 6.4e-222 774.2 529 76.0
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 7.2e-197 691.0 584 63.2
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 1.0e-195 687.2 406 84.2
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 7.9e-188 661.0 529 65.4
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 9.7e-186 654.1 529 63.9
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 8.2e-185 651.0 518 63.9
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 7.0e-184 647.9 491 68.2
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 7.0e-184 647.9 542 62.7
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 2.5e-181 639.4 536 64.0
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 6.7e-179 631.3 517 63.6
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 2.0e-178 629.8 551 61.0
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 1.1e-176 624.0 534 61.2
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 1.1e-176 624.0 551 61.5
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 1.6e-175 620.2 510 62.2
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 1.7e-174 616.7 510 62.0
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 2.2e-174 616.3 510 62.0
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 3.6e-172 609.0 561 59.0
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 1.5e-170 603.6 519 61.3
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 3.3e-170 602.4 521 59.9
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 1.8e-168 596.7 516 58.3
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 3.5e-167 592.4 536 60.6
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 7.7e-167 591.3 510 60.0
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 1.7e-166 590.1 516 58.9
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 2.1e-164 583.2 531 58.6
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 1.0e-163 580.9 516 58.5
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 3.0e-163 579.3 524 58.6
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 1.5e-162 577.0 509 59.3
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 2.6e-162 576.2 548 55.3
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 1.7e-161 573.5 547 55.8
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 2.4e-160 569.7 539 55.3
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 2.4e-160 569.7 528 57.6
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 2.4e-160 569.7 525 57.1
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 3.1e-160 569.3 499 58.5
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 9.1e-160 567.8 621 53.0
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 1.2e-159 567.4 610 52.8
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 2.7e-159 566.2 532 56.6
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 2.9e-158 562.8 543 53.4
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 3.8e-158 562.4 546 55.5
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 3.8e-158 562.4 539 56.4
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 3.8e-158 562.4 531 55.9
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 3.8e-158 562.4 528 58.0
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 8.6e-158 561.2 540 54.8
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 1.9e-157 560.1 565 54.3
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 3.3e-157 559.3 547 55.0
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 3.3e-157 559.3 539 55.3
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 5.5e-157 558.5 480 61.7
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 3.6e-156 555.8 503 58.8
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 1.0e-155 554.3 536 55.6
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 1.4e-155 553.9 539 57.0
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 2.0e-154 550.1 511 57.5
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 4.4e-154 548.9 508 56.9
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 2.2e-153 546.6 533 56.5
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 4.1e-152 542.3 515 56.5
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 1.7e-150 537.0 537 52.0
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 2.9e-150 536.2 541 54.0
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 9.5e-149 531.2 531 52.9
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 3.4e-146 522.7 503 56.9
THA.LOC104813767 Tarenaya hassleriana HOM05D005865 ORTHO05D006867 4.4e-146 522.3 516 55.6
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 2.9e-145 519.6 528 53.4
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 3.7e-145 519.2 526 53.6
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 6.4e-145 518.5 455 59.3
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 2.7e-143 513.1 507 54.4
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 3.5e-143 512.7 516 53.3
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 3.5e-143 512.7 507 54.4
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 3.5e-143 512.7 536 53.0
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 7.8e-143 511.5 517 54.2
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 1.3e-142 510.8 507 54.6
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 1.3e-142 510.8 505 53.9
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 3.3e-141 506.1 514 52.5
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 4.3e-141 505.8 514 52.7
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 1.6e-140 503.8 432 62.3
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 1.6e-140 503.8 511 52.8
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 3.6e-140 502.7 527 52.6
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 4.7e-140 502.3 538 52.2
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 6.2e-140 501.9 539 51.9
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 6.2e-140 501.9 506 53.2
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 1.1e-139 501.1 454 59.9
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 8.9e-139 498.0 543 51.0
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 1.2e-138 497.7 530 51.1
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 1.2e-138 497.7 530 51.1
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 2.6e-138 496.5 536 51.3
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 7.5e-138 495.0 521 51.8
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 1.7e-137 493.8 513 53.8
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 1.7e-137 493.8 508 52.6
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 1.7e-134 483.8 528 50.2
MELO3C017004.2 Cucumis melo HOM05D005865 ORTHO05D006867 4.7e-132 475.7 497 52.5
AL1G33260 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 4.0e-131 472.6 517 51.5
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 8.9e-131 471.5 538 49.1
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 1.0e-126 458.0 529 47.6
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 5.6e-125 452.2 533 48.8
Sc15g0004650 Simmondsia chinensis HOM05D005865 ORTHO05D006867 2.8e-124 449.9 377 62.3
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 7.6e-122 441.8 533 48.0
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 1.1e-117 427.9 328 67.4
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 4.9e-113 412.5 376 58.2
Pp3c20_10980 Physcomitrium patens HOM05D005865 ORTHO05D006867 6.6e-110 402.1 542 42.6
AagrBONN_evm.TU.Sc2ySwM_344.4811 Anthoceros agrestis HOM05D005865 ORTHO05D006867 3.3e-109 399.8 534 42.9
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 5.6e-109 399.1 245 78.0
Mapoly0006s0010 Marchantia polymorpha HOM05D005865 ORTHO05D006867 1.3e-108 397.9 531 43.1
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 2.1e-103 380.6 252 71.0
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 6.9e-99 365.5 441 49.7
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 6.0e-95 352.4 301 62.1
AUR62036767 Chenopodium quinoa HOM05D005865 ORTHO05D006867 3.4e-90 336.7 403 50.1
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 8.4e-89 332.0 211 73.9
SMO364G0210 Selaginella moellendorffii HOM05D005865 ORTHO05D006867 7.7e-82 308.9 276 55.8
SEGI_14934 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 1.1e-80 305.1 236 63.1
CBR_g81579 Chara braunii HOM05D005865 ORTHO05D006867 1.4e-75 288.1 447 39.4
FAN15G0850 Fragaria x ananassa HOM05D005865 ORTHO05D006867 3.8e-73 280.0 284 55.6
BcaC07g42576 Brassica carinata HOM05D005865 ORTHO05D006867 4.2e-64 250.0 243 55.1
MCO16G112 Micromonas commoda HOM05D005865 ORTHO05D006867 6.1e-55 219.5 247 44.1
Cpa.g.sc26.237 Carica papaya HOM05D005865 ORTHO05D006867 3.4e-53 213.8 212 53.8
PRCOL_00003715 Prasinoderma coloniale HOM05D005865 ORTHO05D006867 1.1e-51 208.8 484 30.2
Cpa.g.sc26.238 Carica papaya HOM05D005865 ORTHO05D006867 3.1e-51 207.2 170 61.2
MD15G1004800 Malus domestica HOM05D005865 ORTHO05D006867 1.6e-39 168.3 106 83.0
FAN20G0402 Fragaria x ananassa HOM05D005865 ORTHO05D006867 2.0e-37 161.4 166 53.6
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 7.0e-35 152.9 125 60.0
A07p15690 Brassica napus HOM05D005865 ORTHO05D006867 5.6e-32 143.3 214 42.1
Oeu025004.1 Olea europaea HOM05D005865 ORTHO05D006867 1.8e-30 138.3 188 39.4
Hma1.2p1_1100F.1_g257120 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 2.3e-25 121.3 247 37.2
SHI04100 Sapria himalayana HOM05D005865 ORTHO05D006867 1.6e-23 115.2 199 36.7
Rhsim11G0079600 Rhododendron simsii HOM05D005865 ORTHO05D006867 3.6e-23 114.0 108 48.1
SEGI_13350 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 2.9e-20 104.4 164 41.5
Cre12.g506900 Chlamydomonas reinhardtii HOM05D005865 ORTHO05D006867 1.4e-19 102.1 311 27.3
BcaB03g14322 Brassica carinata HOM05D005865 ORTHO05D006867 1.6e-18 98.6 151 38.4
MELO3C032646.2 Cucumis melo HOM05D005865 ORTHO05D006867 4.7e-15 87.0 65 63.1
EL10Ac1g02029 Beta vulgaris HOM05D056011 ORTHO05D006867 3.4e-13 80.9 45 77.8
SHI04101 Sapria himalayana HOM05D005865 ORTHO05D006867 7.6e-13 79.7 154 39.0
MELO3C035121.2 Cucumis melo HOM05D005865 ORTHO05D000044 3.7e-12 77.4 65 60.0
Cpa.g.sc26.239 Carica papaya HOM05D005865 ORTHO05D006867 1.1e-11 75.9 38 89.5
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 5.4e-11 73.6 137 31.4
MELO3C031410.2 Cucumis melo HOM05D005865 ORTHO05D006867 1.0e-09 69.3 113 35.4
MD15G1004600 Malus domestica HOM05D005865 ORTHO05D006867 6.6e-09 66.6 37 86.5
Lj2A91G56 Lonicera japonica HOM05D005865 ORTHO05D006867 4.7e-07 60.5 36 75.0


User provided reference genes

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