Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 4.3e-203 711.1 350 100.0
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 3.7e-194 681.4 350 93.4
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 6.9e-193 677.2 352 92.6
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 6.9e-177 624.0 352 84.7
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 3.8e-175 618.2 352 82.4
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 8.5e-175 617.1 352 84.1
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.5e-174 615.5 352 83.8
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 4.2e-174 614.8 352 82.4
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.5e-174 614.4 352 83.8
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 2.1e-173 612.5 352 80.4
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 6.1e-173 610.9 354 82.2
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 4.3e-171 604.7 351 81.2
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 5.7e-171 604.4 352 81.2
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 7.4e-171 604.0 352 78.4
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.7e-170 602.8 350 80.0
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 2.8e-170 602.1 352 80.4
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 6.3e-170 600.9 352 79.3
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 2.4e-169 599.0 351 80.1
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 6.9e-169 597.4 352 79.0
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 6.9e-169 597.4 352 79.3
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.5e-168 596.3 350 79.1
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.0e-168 595.9 352 80.1
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 2.0e-168 595.9 352 79.0
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 3.4e-168 595.1 353 78.2
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 7.7e-168 594.0 352 78.7
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 1.0e-167 593.6 339 82.0
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.3e-167 593.2 350 78.0
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 1.3e-167 593.2 351 79.2
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 2.9e-167 592.0 352 79.8
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 3.8e-167 591.7 350 77.1
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 1.4e-166 589.7 361 77.3
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.9e-166 589.3 350 79.1
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.9e-166 589.3 352 79.0
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 7.2e-166 587.4 353 79.0
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 1.2e-165 586.6 350 76.6
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 2.7e-165 585.5 351 76.4
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 7.9e-165 583.9 350 76.9
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 1.8e-164 582.8 348 77.3
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 2.3e-164 582.4 352 78.1
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 3.9e-164 581.6 352 78.4
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 5.1e-164 581.3 350 76.0
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 6.7e-164 580.9 352 77.8
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 4.4e-163 578.2 350 76.3
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 4.4e-163 578.2 350 76.3
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 4.4e-163 578.2 336 78.6
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 7.4e-163 577.4 351 75.8
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 9.7e-163 577.0 355 75.5
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.2e-162 575.9 358 78.2
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 3.7e-162 575.1 350 74.6
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 1.4e-161 573.2 349 78.2
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 2.4e-161 572.4 339 77.9
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 2.4e-161 572.4 352 77.8
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 9.1e-161 570.5 352 76.1
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.5e-160 569.7 350 74.9
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 3.4e-160 568.5 350 74.6
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.3e-159 566.6 351 77.8
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 2.2e-159 565.8 352 74.1
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 3.8e-159 565.1 350 77.1
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 8.5e-159 563.9 338 78.1
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.1e-158 563.5 352 77.3
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.5e-158 562.4 337 78.0
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 3.2e-158 562.0 351 76.9
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 3.2e-158 562.0 351 76.9
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 7.2e-158 560.8 351 77.2
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 2.7e-157 558.9 351 74.4
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 2.7e-157 558.9 351 74.4
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 2.7e-157 558.9 351 76.9
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 3.6e-157 558.5 351 74.6
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 4.7e-157 558.1 351 73.2
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 6.1e-157 557.8 351 74.9
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 6.1e-157 557.8 374 72.2
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 3.0e-156 555.4 353 74.5
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 3.9e-156 555.1 351 76.6
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.9e-156 555.1 351 73.5
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.1e-155 553.5 351 72.9
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 3.3e-155 552.0 347 72.9
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 4.4e-155 551.6 351 73.8
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 4.4e-155 551.6 319 79.3
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.3e-154 550.1 351 72.6
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.3e-154 550.1 351 73.5
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.3e-154 550.1 351 76.4
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 3.7e-154 548.5 350 72.6
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 6.3e-154 547.7 339 76.4
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 8.2e-154 547.4 352 73.9
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.8e-153 546.2 339 75.2
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.8e-153 546.2 319 79.9
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.5e-152 542.0 351 75.2
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 3.5e-152 542.0 382 70.9
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.2e-150 535.0 352 75.9
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.4e-148 530.0 319 78.4
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 3.7e-146 521.9 338 73.4
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 9.1e-145 517.3 346 73.4
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.5e-142 510.0 408 61.0
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 2.1e-141 506.1 338 67.2
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.4e-140 503.4 320 75.9
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 3.7e-138 495.4 318 76.4
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 3.7e-138 495.4 303 75.6
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 2.7e-136 489.2 309 73.5
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 2.7e-136 489.2 309 73.5
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.3e-135 486.9 289 76.8
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 1.7e-135 486.5 352 63.4
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 4.4e-131 471.9 296 77.0
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 5.4e-129 464.9 352 61.1
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 2.9e-127 459.1 269 78.1
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 5.6e-126 454.9 352 59.7
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 6.1e-125 451.4 321 67.9
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 3.0e-124 449.1 306 69.6
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.5e-123 446.8 395 57.2
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 2.6e-123 446.0 263 83.3
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 2.2e-122 443.0 255 80.4
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.2e-112 410.6 223 86.5
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.9e-110 403.3 353 59.5
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.4e-99 365.9 201 84.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.5e-91 340.5 180 86.7
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 3.3e-86 322.8 358 45.8
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 6.2e-85 318.5 352 42.9
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 2.4e-81 306.6 229 60.3
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 4.2e-81 305.8 203 69.5
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.6e-77 293.9 158 82.9
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 2.4e-76 290.0 353 42.2
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.5e-73 280.0 207 64.7
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 1.1e-70 271.2 199 65.3
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.9e-58 229.9 144 72.2
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.8e-53 213.4 126 77.8
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 5.3e-52 209.1 364 30.8
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.0e-47 193.4 125 74.4
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 7.4e-46 188.7 108 78.7
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 1.3e-42 177.9 87 95.4
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.7e-37 161.0 129 58.1
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 2.6e-30 137.1 226 36.7
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 2.7e-27 127.1 306 26.1
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 5.9e-27 125.9 76 77.6
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 8.5e-26 122.1 82 63.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 2.5e-25 120.6 72 69.4
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 8.0e-24 115.5 69 73.9
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.3e-23 114.0 70 71.4
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 8.8e-23 112.1 214 33.2
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 8.0e-16 89.0 50 76.0
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.4e-14 83.6 54 77.8
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.7e-14 82.8 44 84.1
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 3.7e-13 80.1 56 60.7
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 4.9e-13 79.7 359 22.0
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 9.2e-12 75.5 136 36.0
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 6.6e-10 69.3 42 66.7
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.3e-09 67.0 72 47.2
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 4.3e-09 66.6 163 23.9
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 9.5e-09 65.5 48 66.7
Ah.01g008430 Amaranthus hybridus HOM05D000347 ORTHO05D001997 1.2e-08 65.1 169 24.3
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 2.1e-08 64.3 173 30.6
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.4e-07 61.6 41 61.0
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 1.8e-07 61.2 141 25.5
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.2e-07 59.7 32 81.2
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.2e-06 58.5 72 33.3
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.0e-06 57.8 46 54.3


User provided reference genes

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