Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 4735.2 2392 100.0
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 4244.9 2390 90.0
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 4123.2 2412 86.1
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 3824.2 2415 79.5
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 3746.8 2415 77.9
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3721.8 2453 76.6
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3708.7 2453 76.2
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3706.0 2453 76.1
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3696.0 2453 76.0
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3513.4 2437 73.3
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3501.4 2441 73.1
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 3269.2 2437 67.7
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 3235.7 2457 67.3
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 3226.8 2408 68.1
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 3162.5 2442 66.1
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 3145.9 2441 66.1
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 3098.1 2424 65.7
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 3051.2 2430 63.8
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 3025.7 2432 64.1
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 3022.3 2441 63.4
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2976.4 2428 62.1
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2973.7 2429 62.6
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2973.0 2435 62.5
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2959.1 2430 62.4
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2947.9 2419 62.0
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2935.2 2429 61.6
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2933.7 2429 61.6
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2909.4 2443 61.0
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2904.4 2434 61.8
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2893.2 2442 60.6
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2874.3 2475 60.4
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2863.6 2410 60.5
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2844.7 2384 60.9
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2844.3 2411 60.2
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2842.0 2415 60.5
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2833.5 2408 59.9
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2817.3 2412 59.9
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2810.0 2414 60.0
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2806.5 2420 59.9
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2801.5 2421 59.4
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2791.9 2457 58.9
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2771.5 2367 59.3
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2762.6 2429 57.8
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2757.2 2108 66.7
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2747.2 2437 58.6
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2726.0 2418 58.2
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2706.0 2454 58.2
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2694.5 2425 57.9
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2669.8 2430 57.4
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2656.3 2429 57.3
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2644.4 2410 57.6
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2605.1 2425 55.5
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2593.1 2387 56.5
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2591.2 2422 56.2
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2582.7 2427 55.3
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2582.4 2415 56.0
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2580.4 2417 55.3
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2575.4 2417 54.7
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2571.6 2449 55.5
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2568.1 2418 54.8
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2562.3 2428 55.1
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2561.9 2419 55.6
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2561.9 2417 55.6
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2553.1 2442 55.1
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2548.9 2392 55.8
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2547.3 2450 53.9
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2541.1 2438 55.8
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2537.3 2429 54.2
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2532.7 2441 55.1
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2531.9 2424 54.2
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2521.1 2429 54.5
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2511.1 2386 55.5
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2507.2 2432 54.2
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2505.7 2427 55.2
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2505.3 2425 53.8
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2500.7 2408 54.5
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2490.3 2434 54.1
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2485.7 2426 53.0
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2484.1 2415 54.0
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2481.4 2442 53.9
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2475.3 2416 55.1
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2472.2 2422 53.6
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2442.2 2428 52.8
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2423.3 2418 52.4
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2421.4 2440 52.6
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2401.7 2073 60.2
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2397.5 2073 60.2
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2216.0 1827 61.2
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2181.0 2247 51.6
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2109.3 2379 47.3
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 2055.0 2408 46.6
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1938.7 2488 43.8
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1864.0 1459 64.5
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1847.0 1459 64.3
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1813.5 1510 60.9
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1781.5 2428 42.5
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1741.5 1643 55.8
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1694.9 1381 63.0
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1505.0 1456 54.1
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1494.6 1102 67.7
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1354.0 1379 51.8
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1327.8 1563 46.1
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1295.4 1151 58.8
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1268.1 1423 48.6
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1212.2 1043 59.3
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 2.0e-310 1070.5 1009 56.1
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 9.5e-310 1068.1 1029 53.7
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 2.7e-288 996.9 1386 41.7
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.3e-282 978.0 2551 29.3
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 2.0e-275 954.1 895 55.3
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.5e-254 884.8 2096 30.9
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.5e-254 884.0 2142 30.6
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.7e-250 871.3 849 54.9
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 7.4e-238 829.3 764 54.2
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 7.7e-235 819.3 1486 35.9
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 2.9e-218 764.2 803 51.7
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 3.7e-205 720.7 2623 25.4
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 4.6e-179 634.0 789 43.2
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 2.6e-174 618.2 577 54.2
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 2.5e-129 468.8 317 71.6
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 4.6e-123 448.0 459 53.8
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 4.3e-121 441.4 471 51.2
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.2e-120 439.1 467 52.0
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 1.8e-111 409.5 267 74.2
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 2.1e-99 369.4 327 57.2
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 1.8e-87 329.7 380 47.9
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 4.0e-82 312.0 319 53.0
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.2e-81 310.5 430 40.9
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 2.2e-80 306.2 336 47.9
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 4.9e-72 278.5 215 61.9
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 2.4e-71 276.2 433 39.3
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.9e-63 250.0 479 34.4
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.6e-59 236.9 150 76.7
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.6e-57 228.0 360 40.3
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 7.6e-57 228.0 277 48.0
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.7e-51 208.8 274 45.6
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-50 206.5 184 60.3
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.6e-46 193.7 122 76.2
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 6.0e-46 191.8 146 63.0
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 4.8e-43 182.2 315 36.8
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 9.0e-42 177.9 123 67.5
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 3.4e-41 176.0 792 22.9
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 9.3e-39 167.9 122 69.7
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 1.9e-36 160.2 187 47.6
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 4.3e-36 159.1 110 70.9
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 9.0e-34 151.4 239 38.9
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 1.7e-32 147.1 100 72.0
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 1.2e-30 141.0 309 35.3
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.1e-30 140.2 125 52.8
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.4e-28 131.7 290 29.3
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 2.4e-26 126.7 336 28.3
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 5.3e-26 125.6 140 47.1
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 6.5e-24 118.6 125 44.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.7e-22 113.2 81 67.9
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 2.8e-19 103.2 76 60.5
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 6.2e-19 102.1 76 60.5
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 6.9e-18 98.6 124 46.8
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 6.5e-16 92.0 123 41.5
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.5e-16 92.0 180 33.9
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 2.7e-14 86.7 97 48.5
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 1.3e-13 84.3 75 52.0
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 6.9e-10 72.0 94 39.4
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.5e-09 69.3 99 36.4
RcHm_v2.0_Chr7g0191401 Rosa chinensis HOM05D015922 ORTHO05D346943 8.5e-08 65.1 53 60.4
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 2.5e-07 63.5 42 76.2
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.2e-07 62.8 72 41.7
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 1.6e-06 60.8 56 48.2
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 6.1e-06 58.9 52 50.0
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 6.1e-06 58.9 52 50.0
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 6.1e-06 58.9 52 50.0
Psat0ss3938g0040 Pisum sativum HOM05D001673 ORTHO05D000895 6.1e-06 58.9 39 69.2


User provided reference genes

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