Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1258300 Malus domestica HOM05D004403 ORTHO05D006164 1.9e-239 832.0 408 100.0
MD01G1186100 Malus domestica HOM05D004403 ORTHO05D006164 1.4e-109 400.6 259 79.9
Prupe.2G282700 Prunus persica HOM05D004403 ORTHO05D006164 9.7e-106 387.9 259 76.4
FvH4_7g28210 Fragaria vesca HOM05D004403 ORTHO05D006164 7.7e-103 378.3 259 75.7
FAN03G1790 Fragaria x ananassa HOM05D004403 ORTHO05D006164 7.7e-103 378.3 259 75.7
FAN06G1852 Fragaria x ananassa HOM05D004403 ORTHO05D006164 7.7e-103 378.3 259 75.7
FAN06G4744 Fragaria x ananassa HOM05D004403 ORTHO05D006164 7.7e-103 378.3 259 75.7
FAN10G1553 Fragaria x ananassa HOM05D004403 ORTHO05D006164 7.7e-103 378.3 259 75.7
FAN01G1597 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.3e-102 377.5 259 75.3
RcHm_v2.0_Chr1g0375181 Rosa chinensis HOM05D004403 ORTHO05D006164 2.2e-102 376.7 259 74.5
Thecc.03G162000 Theobroma cacao HOM05D004403 ORTHO05D006164 2.9e-102 376.3 258 73.6
FAN03G0558 Fragaria x ananassa HOM05D004403 ORTHO05D006164 3.8e-102 375.9 245 79.2
COL.COLO4_14184 Corchorus olitorius HOM05D004403 ORTHO05D006164 1.5e-101 374.0 258 73.3
Gohir.D09G045100 Gossypium hirsutum HOM05D004403 ORTHO05D006164 2.5e-101 373.2 258 72.9
Gohir.A09G043600 Gossypium hirsutum HOM05D004403 ORTHO05D006164 4.2e-101 372.5 258 72.9
Gorai.006G065300 Gossypium raimondii HOM05D004403 ORTHO05D006164 4.2e-101 372.5 258 72.9
Duzib205G1350 Durio zibethinus HOM05D004403 ORTHO05D006164 1.2e-100 370.9 258 72.5
CiPaw.04G063300 Carya illinoinensis HOM05D004403 ORTHO05D006164 8.0e-100 368.2 259 72.6
VMungo0464G1100 Vigna mungo HOM05D004403 ORTHO05D006164 8.0e-100 368.2 312 63.1
Cpa.g.sc3.267 Carica papaya HOM05D004403 ORTHO05D006164 1.0e-99 367.9 245 75.9
Ca_26390_v3 Cicer arietinum L. HOM05D004403 ORTHO05D006164 1.4e-99 367.5 274 68.6
Cfa008231 Carpinus fangiana HOM05D004403 ORTHO05D006164 3.0e-99 366.3 245 75.9
Ciclev10004147m.g Citrus clementina HOM05D004403 ORTHO05D006164 3.0e-99 366.3 248 73.8
Glyma.16G203900 Glycine max HOM05D004403 ORTHO05D006164 3.0e-99 366.3 247 74.1
Haze_13825 Corylus avellana HOM05D004403 ORTHO05D006164 6.8e-99 365.2 245 75.9
Lalb_Chr03g0033081 Lupinus albus HOM05D004403 ORTHO05D006164 6.8e-99 365.2 248 73.4
arahy.Tifrunner.gnm1.ann1.R8RU34 Arachis hypogaea HOM05D004403 ORTHO05D006164 8.8e-99 364.8 248 74.6
TAR375G1017 Trochodendron aralioides HOM05D004403 ORTHO05D006164 8.8e-99 364.8 273 67.8
arahy.Tifrunner.gnm1.ann1.ZK7SIQ Arachis hypogaea HOM05D004403 ORTHO05D006164 1.2e-98 364.4 248 74.6
CsaV3_2G009710 Cucumis sativus L. HOM05D004403 ORTHO05D006164 1.2e-98 364.4 259 71.4
CSS0005074 Camellia sinensis var. sinensis HOM05D004403 ORTHO05D006164 1.5e-98 364.0 248 74.2
MELO3C008722.2 Cucumis melo HOM05D004403 ORTHO05D006164 2.0e-98 363.6 248 74.6
Medtr6g461810 Medicago truncatula HOM05D004403 ORTHO05D006164 2.0e-98 363.6 274 67.9
Lj2g0001335 Lotus japonicus HOM05D004403 ORTHO05D006164 4.4e-98 362.5 247 72.5
TWI39G0431 Tripterygium wilfordii HOM05D004403 ORTHO05D006164 5.7e-98 362.1 259 71.4
Glyma.09G153100 Glycine max HOM05D004403 ORTHO05D006164 1.7e-97 360.5 248 73.0
Sed0016961 Sechium edule HOM05D004403 ORTHO05D006164 2.2e-97 360.1 259 71.0
Eucgr.K00143 Eucalyptus grandis HOM05D004403 ORTHO05D006164 2.8e-97 359.8 259 71.4
Psat1g115120 Pisum sativum HOM05D004403 ORTHO05D006164 4.8e-97 359.0 248 73.4
PGR142G2186 Punica granatum HOM05D004403 ORTHO05D006164 4.8e-97 359.0 259 70.7
GSVIVG01018506001 Vitis vinifera HOM05D004403 ORTHO05D006164 2.4e-96 356.7 245 73.5
THA.LOC104825074 Tarenaya hassleriana HOM05D004403 ORTHO05D006164 3.1e-96 356.3 258 69.8
EL10Ac3g05779 Beta vulgaris HOM05D004403 ORTHO05D006164 5.3e-96 355.5 248 70.2
Thhalv10012441m.g Eutrema salsugineum HOM05D004403 ORTHO05D006164 5.3e-96 355.5 248 71.8
Sp6g13860 Schrenkiella parvula HOM05D004403 ORTHO05D006164 9.1e-96 354.8 248 71.8
TPR.G10680 Trifolium pratense HOM05D004403 ORTHO05D006164 9.1e-96 354.8 248 71.8
C02p20300 Brassica napus HOM05D004403 ORTHO05D006164 1.6e-95 354.0 248 72.2
Carub.0008s1166 Capsella rubella HOM05D004403 ORTHO05D006164 1.6e-95 354.0 248 71.0
A02p12180 Brassica napus HOM05D004403 ORTHO05D006164 2.7e-95 353.2 248 71.8
BraA02t06282Z Brassica rapa HOM05D004403 ORTHO05D006164 2.7e-95 353.2 248 71.8
AUR62035037 Chenopodium quinoa HOM05D004403 ORTHO05D006164 2.7e-95 353.2 248 71.0
BcaC03g14584 Brassica carinata HOM05D004403 ORTHO05D006164 3.5e-95 352.8 248 71.8
BolC2t08162H Brassica oleracea HOM05D004403 ORTHO05D006164 3.5e-95 352.8 248 71.8
CARHR264420 Cardamine hirsuta HOM05D004403 ORTHO05D006164 4.5e-95 352.4 248 71.0
AL8G25910 Arabidopsis lyrata HOM05D004403 ORTHO05D006164 5.9e-95 352.1 248 71.0
BcaB05g23994 Brassica carinata HOM05D004403 ORTHO05D006164 7.7e-95 351.7 248 71.4
MBI04_g32240_MAGBIO Magnolia biondii HOM05D004403 ORTHO05D006164 7.7e-95 351.7 274 65.3
AT5G51660 Arabidopsis thaliana HOM05D004403 ORTHO05D006164 1.3e-94 350.9 248 70.6
Hma1.2p1_0099F.1_g048870 Hydrangea macrophylla HOM05D004403 ORTHO05D006164 1.7e-94 350.5 259 67.6
AUR62016090 Chenopodium quinoa HOM05D004403 ORTHO05D006164 2.2e-94 350.1 248 70.2
Aqoxy7G00599 Aquilegia oxysepala HOM05D004403 ORTHO05D006164 2.9e-94 349.7 244 71.7
Actinidia25041 Actinidia chinensis HOM05D004403 ORTHO05D006164 3.8e-94 349.4 248 71.0
Potri.012G022700 Populus trichocarpa HOM05D004403 ORTHO05D006164 8.5e-94 348.2 259 70.3
Rhsim03G0172000 Rhododendron simsii HOM05D004403 ORTHO05D006164 1.1e-93 347.8 242 71.9
vmacro06764 Vaccinium macrocarpon HOM05D004403 ORTHO05D006164 3.2e-93 346.3 248 70.2
Phvul.004G126600 Phaseolus vulgaris HOM05D004403 ORTHO05D006164 4.2e-93 345.9 241 73.0
Ah.07g208350 Amaranthus hybridus HOM05D004403 ORTHO05D006164 1.2e-92 344.4 248 68.5
Sabra12G0011100 Salix brachista HOM05D004403 ORTHO05D006164 2.1e-92 343.6 259 69.5
HanXRQChr08g0214911 Helianthus annuus HOM05D004403 ORTHO05D006164 4.7e-92 342.4 274 64.6
QL12p039581 Quercus lobata HOM05D004403 ORTHO05D006164 1.0e-91 341.3 312 59.9
Aa31LG3G8090 Aethionema arabicum HOM05D004403 ORTHO05D006164 1.4e-91 340.9 252 69.4
Manes.06G138300 Manihot esculenta HOM05D004403 ORTHO05D006164 4.0e-91 339.3 243 72.8
Hund11791 Selenicereus undatus HOM05D004403 ORTHO05D006164 4.0e-91 339.3 248 67.3
PSO478G4614 Papaver somniferum HOM05D004403 ORTHO05D006164 5.2e-91 339.0 274 64.2
PSO782G0596 Papaver somniferum HOM05D004403 ORTHO05D006164 5.2e-91 339.0 274 64.2
Lsat_1_v5_gn_8_8061 Lactuca sativa HOM05D004403 ORTHO05D006164 8.8e-91 338.2 274 63.9
CAN.G916.4 Capsicum annuum HOM05D004403 ORTHO05D006164 7.5e-90 335.1 259 65.3
DCAR_016012 Daucus carota HOM05D004403 ORTHO05D006164 1.3e-89 334.3 259 66.8
ECA233G5768 Erigeron canadensis HOM05D004403 ORTHO05D006164 2.2e-89 333.6 259 65.6
Sc17g0003760 Simmondsia chinensis HOM05D004403 ORTHO05D006164 2.2e-89 333.6 274 61.7
DCAR_005517 Daucus carota HOM05D004403 ORTHO05D006164 6.3e-89 332.0 259 66.4
ATR0810G058 Amborella trichopoda HOM05D004403 ORTHO05D006164 2.0e-87 327.0 248 66.9
Lj8C36G18 Lonicera japonica HOM05D004403 ORTHO05D006164 2.0e-87 327.0 259 66.8
Migut.F01168 Erythranthe guttata HOM05D004403 ORTHO05D006164 2.9e-86 323.2 248 66.5
Sopen03g003090 Solanum pennellii HOM05D004403 ORTHO05D006164 2.9e-86 323.2 248 64.9
SalBow2G1183 Salvia bowleyana HOM05D004403 ORTHO05D006164 5.5e-85 318.9 250 66.8
Cc02_g03860 Coffea canephora HOM05D004403 ORTHO05D006164 7.2e-85 318.5 296 57.1
SGA_v2.0_scaffold303G47887 Striga asiatica HOM05D004403 ORTHO05D006164 1.2e-82 311.2 272 60.7
Oeu021730.2 Olea europaea HOM05D004403 ORTHO05D006164 4.9e-81 305.8 302 55.6
Solyc03g007100.3 Solanum lycopersicum HOM05D004403 ORTHO05D006164 5.0e-78 295.8 238 62.6
unitig_0.g469 Utricularia gibba HOM05D004403 ORTHO05D006164 6.6e-78 295.4 248 62.5
Nn1g01207 Nelumbo nucifera HOM05D004403 ORTHO05D006164 5.6e-77 292.4 238 63.4
Zm00001eb086790 Zea mays HOM05D004403 ORTHO05D006164 1.5e-74 284.3 248 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3689 Anthoceros agrestis HOM05D004403 ORTHO05D006164 2.9e-73 280.0 249 56.2
Pp3c11_8810 Physcomitrium patens HOM05D004403 ORTHO05D006164 2.9e-73 280.0 259 55.2
CDE12G0311 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 1.2e-71 274.6 193 68.9
Peaxi162Scf00192g01018 Petunia axillaris HOM05D004403 ORTHO05D006164 1.0e-70 271.6 193 68.4
Nitab4.5_0009404g0010 Nicotiana tabacum HOM05D004403 ORTHO05D006164 2.1e-68 263.8 166 74.1
Mapoly0021s0083 Marchantia polymorpha HOM05D004403 ORTHO05D006164 4.0e-67 259.6 249 55.4
Nitab4.5_0000072g0400 Nicotiana tabacum HOM05D004403 ORTHO05D006164 1.5e-66 257.7 233 57.5
SMO356G0002 Selaginella moellendorffii HOM05D004403 ORTHO05D006164 7.5e-66 255.4 255 51.0
Psat1g115160 Pisum sativum HOM05D004403 ORTHO05D006164 2.9e-65 253.4 248 55.6
TPR.G11029 Trifolium pratense HOM05D004403 ORTHO05D006164 2.9e-65 253.4 245 56.7
RhsimUnG0154200 Rhododendron simsii HOM05D000504 ORTHO05D000403 4.1e-64 249.6 207 61.8
TAR375G0129 Trochodendron aralioides HOM05D004403 ORTHO05D006164 1.0e-62 245.0 249 53.4
CBR_g28568 Chara braunii HOM05D004403 ORTHO05D006164 1.3e-62 244.6 257 49.4
COL.COLO4_14185 Corchorus olitorius HOM05D004403 ORTHO05D006164 3.0e-62 243.4 249 53.4
Atru.chr1.628 Acer truncatum HOM05D004403 ORTHO05D006164 5.1e-62 242.7 249 53.0
Dinv22934 Davidia involucrata HOM05D004403 ORTHO05D006164 1.2e-60 238.0 248 52.8
CDE12G0834 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 5.8e-58 229.2 248 50.0
HPP92_003527 Vanilla planifolia HOM05D004403 ORTHO05D006164 2.9e-57 226.9 249 50.6
Duzib068G0276 Durio zibethinus HOM05D004403 ORTHO05D006164 6.0e-55 219.2 144 73.6
SEGI_12165 Sequoiadendron giganteum HOM05D004403 ORTHO05D006164 1.1e-53 214.9 243 49.4
ClCG09G013390 Citrullus lanatus HOM05D004403 ORTHO05D006164 6.2e-52 209.1 139 73.4
CARHR264440 Cardamine hirsuta HOM05D004403 ORTHO05D006164 1.3e-49 201.4 136 71.3
ClCG09G013360 Citrullus lanatus HOM05D004403 ORTHO05D006164 1.0e-38 165.2 96 79.2
DCAR_028870 Daucus carota HOM05D004403 ORTHO05D006164 2.1e-36 157.5 118 66.1
PRCOL_00006166 Prasinoderma coloniale HOM05D004403 ORTHO05D006164 9.6e-29 132.1 249 34.5
Lsat_1_v5_gn_5_118921 Lactuca sativa HOM05D004403 ORTHO05D006164 6.2e-28 129.4 87 73.6
HPP92_003516 Vanilla planifolia HOM05D004403 ORTHO05D006164 2.4e-27 127.5 95 62.1
Os04g0252200 Oryza sativa ssp. japonica HOM05D004403 ORTHO05D006164 6.9e-27 125.9 98 60.2
Atru.chr1.4080 Acer truncatum HOM05D004403 ORTHO05D019398 5.8e-26 122.9 70 80.0
ClCG09G013380 Citrullus lanatus HOM05D004403 ORTHO05D006164 2.7e-23 114.0 115 58.3
MCO07G456 Micromonas commoda HOM05D004403 ORTHO05D006164 1.9e-21 107.8 223 34.5
CDE12G0971 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 9.6e-21 105.5 95 57.9
Cre13.g573450 Chlamydomonas reinhardtii HOM05D004403 ORTHO05D006164 1.6e-20 104.8 173 38.2
Glyma.17G179000 Glycine max HOM05D004403 ORTHO05D006164 9.3e-16 89.0 50 76.0
SHI13862 Sapria himalayana HOM05D004403 ORTHO05D006164 3.0e-14 84.0 47 76.6
ClCG09G013370 Citrullus lanatus HOM05D004403 ORTHO05D019398 5.1e-14 83.2 42 88.1
Dinv02141 Davidia involucrata HOM05D004403 ORTHO05D006164 8.2e-12 75.9 32 96.9
HanXRQChr12g0366371 Helianthus annuus HOM05D004403 ORTHO05D019398 2.0e-10 71.2 47 66.0
SEGI_20486 Sequoiadendron giganteum HOM05D004403 ORTHO05D006164 1.3e-09 68.6 47 63.8
Sopen12g017630 Solanum pennellii HOM05D000004 ORTHO05D000002 2.9e-09 67.4 44 72.7
TAR374G0906 Trochodendron aralioides HOM05D004403 ORTHO05D006164 8.5e-09 65.9 56 62.5
SEGI_07215 Sequoiadendron giganteum HOM05D004403 ORTHO05D043538 1.0e-06 58.9 44 68.2


User provided reference genes

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