Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.3e-199 699.5 363 100.0
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 3.9e-183 644.8 363 92.3
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 7.4e-174 614.0 363 87.6
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 2.7e-155 552.4 362 79.6
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.6e-152 543.1 360 78.3
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.7e-152 541.6 360 78.1
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 4.4e-150 535.0 363 76.6
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.1e-148 528.9 377 74.0
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.0e-146 521.5 377 73.2
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.6e-136 490.0 365 70.4
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.4e-135 486.9 359 72.1
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.8e-135 486.5 359 70.8
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.6e-134 482.6 362 70.2
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.8e-132 476.5 363 68.9
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 3.2e-132 475.7 359 70.2
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 5.4e-132 474.9 362 71.3
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 5.4e-132 474.9 360 69.4
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 1.2e-131 473.8 360 68.1
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.7e-131 472.6 364 69.5
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 6.0e-131 471.5 363 69.4
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.5e-129 466.8 362 66.0
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 2.5e-129 466.1 379 66.0
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 2.8e-128 462.6 359 68.5
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 3.6e-128 462.2 383 67.1
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.6e-128 462.2 359 68.5
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 4.7e-128 461.8 360 69.2
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 4.7e-128 461.8 359 69.4
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 4.7e-128 461.8 378 66.7
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 6.2e-128 461.5 365 67.9
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 8.0e-128 461.1 360 68.1
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 3.4e-126 455.7 362 68.2
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 1.7e-125 453.4 363 67.2
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 2.9e-125 452.6 361 67.0
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 4.9e-125 451.8 357 67.5
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 4.9e-125 451.8 364 66.5
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.9e-125 451.8 359 67.4
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.9e-124 449.9 372 66.1
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 4.1e-124 448.7 366 66.7
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 5.4e-124 448.4 363 66.1
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 1.2e-123 447.2 366 66.9
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.6e-123 446.8 363 65.6
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.6e-123 446.8 359 65.2
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 2.7e-123 446.0 370 65.4
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.6e-123 445.3 356 67.1
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.8e-123 444.5 363 65.8
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.8e-123 444.5 363 65.8
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.0e-122 444.1 363 66.1
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 5.0e-122 441.8 357 66.9
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 9.5e-121 437.6 364 65.4
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.8e-120 436.0 358 64.5
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 2.8e-120 436.0 380 64.5
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 3.6e-120 435.6 367 65.1
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 4.7e-120 435.3 356 64.0
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 4.7e-120 435.3 364 65.7
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 5.2e-119 431.8 364 65.9
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 6.8e-119 431.4 355 65.1
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 6.8e-119 431.4 364 65.9
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 6.8e-119 431.4 364 66.2
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.2e-118 430.6 362 64.1
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.6e-118 429.5 358 66.5
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 5.8e-118 428.3 390 61.5
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 7.5e-118 427.9 363 64.2
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 7.5e-118 427.9 363 63.9
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.7e-117 426.8 360 64.7
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.9e-117 426.0 361 61.2
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.9e-116 423.3 344 67.4
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.9e-116 423.3 356 64.6
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.4e-116 422.9 359 64.1
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.0e-114 417.5 428 56.1
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 5.6e-113 411.8 383 58.7
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.2e-112 410.6 383 58.5
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.1e-111 407.5 359 61.8
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 5.8e-110 401.7 362 61.9
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 7.6e-110 401.4 365 62.7
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 1.3e-109 400.6 367 60.2
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 3.8e-109 399.1 369 61.8
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 3.8e-109 399.1 365 59.7
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.6e-107 393.7 361 61.5
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.7e-107 392.9 384 57.0
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 3.0e-106 389.4 356 61.0
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 6.6e-106 388.3 367 59.4
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 1.5e-105 387.1 364 60.4
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.9e-105 386.7 376 58.8
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 4.4e-102 375.6 366 60.7
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 9.9e-102 374.4 345 60.6
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 8.4e-101 371.3 391 55.5
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.9e-100 370.2 365 57.0
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 7.1e-100 368.2 365 57.3
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 9.3e-100 367.9 392 54.1
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 3.5e-99 365.9 365 56.7
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 3.5e-99 365.9 384 55.7
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 4.6e-99 365.5 369 56.9
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.5e-97 360.5 433 50.1
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.6e-96 357.1 368 54.9
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 1.4e-95 354.0 342 55.8
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.1e-95 352.8 345 57.7
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.5e-94 349.0 363 56.5
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 5.8e-94 348.6 367 56.4
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 9.9e-94 347.8 385 54.8
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 9.9e-94 347.8 345 57.7
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.9e-93 346.3 369 52.0
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-91 340.9 385 51.9
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.2e-91 340.9 385 51.9
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 5.1e-90 335.5 356 54.8
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 2.8e-88 329.7 385 52.5
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 7.1e-84 315.1 385 49.6
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 3.5e-83 312.8 384 49.5
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.5e-83 312.8 365 49.9
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 2.8e-80 303.1 388 49.5
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 4.8e-80 302.4 385 49.1
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 4.8e-80 302.4 385 49.1
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.4e-79 300.8 388 49.5
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 5.8e-78 295.4 380 48.2
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 7.9e-75 285.0 335 50.1
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 6.3e-72 275.4 394 42.6
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.8e-71 273.9 300 54.0
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 1.2e-70 271.2 233 63.1
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.7e-69 267.3 365 46.3
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.4e-68 264.2 189 72.0
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 7.2e-68 261.9 240 60.4
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 4.5e-62 242.7 345 42.9
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 1.8e-55 220.7 433 34.6
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 1.4e-52 211.1 307 43.3
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 2.0e-49 200.7 224 51.8
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 5.3e-47 192.6 359 37.0
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.7e-40 171.0 118 75.4
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 4.1e-39 166.4 113 70.8
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 9.8e-33 145.2 164 53.0
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 2.0e-17 94.4 234 28.2
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.4e-17 93.2 101 50.5
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 3.7e-16 90.1 399 26.8
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.4e-15 87.4 56 76.8
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.4e-15 87.4 117 47.0
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.2e-14 85.1 72 56.9
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 2.7e-14 84.0 56 75.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 9.5e-12 75.5 250 28.8
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 2.1e-11 74.3 63 61.9
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-10 72.0 62 62.9
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.4e-10 71.6 62 62.9
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 1.5e-09 68.2 62 61.3
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.5e-09 68.2 50 64.0
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 6.0e-06 56.2 416 25.0


User provided reference genes

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