Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1994.2 1024 100.0
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1805.0 974 95.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1767.7 1022 89.0
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1740.3 1024 86.8
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1696.4 1024 84.5
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1668.7 1024 83.6
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1666.0 1026 84.5
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1659.0 1031 82.8
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1647.5 1024 82.5
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1632.1 1024 82.1
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1599.7 1037 79.8
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1593.9 1025 80.1
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1590.1 1025 80.0
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1590.1 1012 80.8
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1588.5 1024 79.9
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1576.6 1025 78.7
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1566.6 1025 78.1
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1564.3 1031 78.9
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1559.7 1033 77.2
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1558.1 1031 78.7
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1553.1 1022 78.0
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1550.8 1027 76.6
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1544.3 1024 77.9
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1541.2 1026 77.7
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1540.4 1027 77.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1536.5 1028 76.3
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1531.2 1028 75.9
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1528.5 1032 77.2
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1525.4 1031 75.9
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1513.8 1025 77.0
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1511.1 1032 76.9
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1510.7 1024 77.1
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1508.8 1074 74.2
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1507.3 1053 75.3
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1507.3 1027 75.6
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1505.7 1025 76.5
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1504.2 1020 76.6
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1503.0 1031 76.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1502.3 1022 76.7
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1501.9 1033 76.1
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1499.6 1026 75.2
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1494.2 1037 75.5
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1493.4 1022 75.7
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1492.6 1036 75.6
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1491.9 1049 74.8
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1481.5 1018 76.1
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1478.4 1028 74.4
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1478.4 1026 75.9
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1474.5 1033 75.4
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1472.2 1030 75.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1471.1 1043 74.2
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1469.1 1005 75.2
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1465.7 1033 75.4
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1463.0 1032 74.9
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1463.0 1033 75.3
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1460.7 1030 74.0
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1459.1 1024 75.6
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1459.1 1063 73.0
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1455.7 1039 74.5
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1448.0 1028 73.6
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1438.7 1034 73.9
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1436.4 1022 72.5
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1431.8 1022 72.0
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1431.4 1036 72.3
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1431.4 1036 72.3
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1426.8 1017 73.3
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1419.4 1016 73.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1417.5 1001 74.0
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1412.5 1015 72.8
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1410.2 1057 71.1
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1408.7 1015 72.6
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1407.9 1030 71.7
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1403.7 936 76.7
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1403.3 1015 71.7
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1402.5 1023 70.6
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1400.6 1030 71.6
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1400.6 1021 72.2
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1028 70.9
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1391.7 1070 68.7
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1391.7 1038 70.9
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1038 70.7
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1387.5 1012 71.5
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1387.5 1023 70.1
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1387.1 1014 72.0
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1384.0 1017 70.6
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1382.5 1038 70.8
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1374.8 1012 70.9
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1372.1 1030 70.9
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1368.6 1030 70.5
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1364.7 888 78.9
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1362.4 1027 70.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1359.4 1029 68.8
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 1035 69.8
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1358.6 1039 68.3
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1358.2 1032 70.6
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1356.7 1034 69.4
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1355.9 887 79.7
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1355.5 1031 69.8
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1354.7 1032 70.3
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1352.4 1031 70.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1340.9 1038 68.8
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1337.8 1038 68.4
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1335.5 1042 68.1
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1335.1 1038 68.5
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1330.5 1031 67.8
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1328.5 987 70.5
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1326.6 991 69.8
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1323.9 914 76.9
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 1014 68.0
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1305.8 1007 68.6
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1301.2 1027 67.7
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1032 67.8
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1298.1 1027 67.4
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1289.6 1025 67.6
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1285.0 1026 67.2
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1279.6 1031 65.9
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1270.0 1044 65.7
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1224.9 1030 63.3
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1218.8 1037 64.6
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1207.2 930 68.3
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1203.7 1033 65.2
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1200.7 1024 62.7
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1194.1 1042 63.6
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1182.5 1002 63.5
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1147.1 1029 60.9
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1144.0 1034 60.2
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1130.9 848 68.9
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1114.8 1065 58.2
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 0.0e+00 1078.5 989 60.5
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 5.0e-300 1034.6 1030 59.4
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 6.7e-297 1024.2 899 60.2
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.8e-286 989.6 803 67.9
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 4.5e-277 958.4 847 61.0
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 6.3e-271 937.9 716 70.8
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.2e-269 933.7 995 52.3
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.7e-255 886.7 740 67.4
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.7e-252 876.7 976 50.6
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 3.3e-251 872.5 1069 48.0
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.9e-247 858.6 979 50.1
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 5.2e-241 838.6 1016 48.4
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 9.2e-230 801.2 827 52.5
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.2e-224 784.3 813 53.3
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.5e-211 740.7 715 63.1
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.1e-201 708.0 913 46.1
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 2.8e-194 683.3 645 58.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 9.4e-190 668.3 831 50.4
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 2.1e-173 614.0 631 55.6
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.8e-170 603.6 973 39.8
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.5e-158 563.9 624 52.9
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 3.6e-157 560.1 668 50.9
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-146 525.0 608 51.2
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.7e-146 524.6 1130 34.2
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 9.8e-131 472.2 439 57.4
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 4.1e-121 440.3 646 44.7
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 3.5e-120 437.2 543 49.0
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-116 425.6 277 80.1
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.5e-102 378.6 237 82.3
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.8e-85 321.2 311 57.2
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 2.8e-85 321.2 267 64.8
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 1.8e-71 275.4 979 29.1
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 3.7e-69 267.7 293 53.6
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.9e-58 231.5 219 55.3
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 3.5e-51 208.0 907 24.0
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.9e-49 202.2 522 30.3
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.4e-46 191.4 173 53.8
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 5.9e-43 180.6 155 58.7
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.9e-43 180.6 233 42.9
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 3.2e-41 174.9 149 59.7
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 8.8e-39 166.8 150 55.3
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.1e-33 149.8 186 48.4
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.1e-28 131.3 128 53.1
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 6.8e-23 114.0 112 51.8
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.8e-22 110.2 96 54.2
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.8e-22 110.2 96 54.2
MD05G1190300 Malus domestica HOM05D003977 ORTHO05D004536 7.5e-14 84.0 71 64.8
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.3e-13 83.2 60 71.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.3e-13 83.2 85 58.8
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.6e-11 76.3 66 56.1
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 8.9e-07 60.5 47 68.1
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 3.4e-06 58.5 46 69.6


User provided reference genes

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