Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 1.9e-104 382.5 187 100.0
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 2.8e-84 315.5 164 92.7
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 3.1e-75 285.4 164 84.8
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 9.4e-72 273.9 164 79.3
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 6.1e-71 271.2 164 79.9
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 3.9e-70 268.5 164 78.7
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 1.3e-68 263.5 164 75.6
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 8.2e-68 260.8 164 74.4
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 1.4e-67 260.0 164 75.0
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 1.8e-67 259.6 164 75.0
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 1.8e-67 259.6 150 84.7
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 4.1e-67 258.5 156 79.5
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 7.0e-67 257.7 163 74.2
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 7.0e-67 257.7 163 74.2
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 9.1e-67 257.3 164 72.6
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 1.2e-66 256.9 164 74.4
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 1.2e-66 256.9 164 74.4
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 1.2e-66 256.9 164 74.4
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 1.2e-66 256.9 164 74.4
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 1.2e-66 256.9 163 74.2
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 2.0e-66 256.1 165 71.5
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 2.0e-66 256.1 164 75.0
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 2.6e-66 255.8 164 73.8
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 2.6e-66 255.8 164 73.8
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 2.6e-66 255.8 164 72.6
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 4.5e-66 255.0 164 73.2
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 5.9e-66 254.6 164 72.6
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 5.9e-66 254.6 164 73.8
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 7.7e-66 254.2 164 73.8
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 1.9e-64 249.6 164 75.0
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 1.9e-64 249.6 164 72.0
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 2.5e-64 249.2 167 71.9
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 4.2e-64 248.4 169 70.4
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 9.4e-64 247.3 168 72.0
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 2.7e-63 245.7 168 72.0
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 6.1e-63 244.6 164 72.6
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 8.0e-63 244.2 164 70.1
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.0e-62 242.3 164 69.5
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 3.0e-62 242.3 164 72.0
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 4.0e-62 241.9 164 70.7
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 4.0e-62 241.9 164 73.2
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 5.2e-62 241.5 164 71.3
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 1.1e-61 240.4 163 69.9
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 3.3e-61 238.8 167 68.3
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 4.4e-61 238.4 167 67.7
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 4.4e-61 238.4 165 68.5
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 7.5e-61 237.7 169 68.6
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 9.7e-61 237.3 169 67.5
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 2.2e-60 236.1 164 68.9
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 2.8e-60 235.7 181 65.7
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 3.7e-60 235.3 164 68.9
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 3.7e-60 235.3 164 68.3
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 3.7e-60 235.3 167 67.7
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 4.8e-60 235.0 163 68.7
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 4.8e-60 235.0 167 67.7
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 4.8e-60 235.0 167 67.7
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 2.4e-59 232.6 164 68.9
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 9.1e-59 230.7 165 67.9
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 1.6e-58 229.9 167 66.5
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 1.6e-58 229.9 164 67.7
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 2.0e-58 229.6 163 69.9
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 4.5e-58 228.4 167 66.5
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 5.9e-58 228.0 164 68.3
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 2.2e-57 226.1 163 65.6
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 3.2e-56 222.2 164 66.5
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 7.2e-56 221.1 169 63.3
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 1.2e-55 220.3 175 65.7
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 1.6e-55 219.9 166 64.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.6e-55 218.8 165 67.9
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 1.8e-54 216.5 164 64.6
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 1.8e-54 216.5 163 65.0
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 3.0e-54 215.7 177 58.8
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 3.0e-54 215.7 163 65.0
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 3.4e-53 212.2 164 61.0
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 3.4e-53 212.2 188 59.0
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 5.7e-53 211.5 164 61.0
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 7.5e-53 211.1 164 59.8
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 9.8e-53 210.7 164 60.4
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 8.3e-52 207.6 164 60.4
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 1.4e-51 206.8 164 60.4
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.8e-51 206.5 167 59.9
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.8e-51 206.5 164 59.1
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 3.1e-51 205.7 164 61.6
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 4.1e-51 205.3 164 61.0
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 5.4e-51 204.9 167 59.9
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 9.1e-51 204.1 164 59.8
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 1.6e-50 203.4 177 59.3
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 3.8e-49 198.7 164 59.8
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.5e-48 196.1 151 66.9
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 1.2e-47 193.7 166 57.8
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 2.7e-47 192.6 178 56.7
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 8.0e-47 191.0 165 60.6
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 9.1e-43 177.6 169 53.8
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 9.1e-43 177.6 169 53.8
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 1.6e-42 176.8 176 51.7
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 7.7e-42 174.5 160 54.4
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 4.0e-38 162.2 84 89.3
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.7e-36 156.8 104 74.0
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 2.7e-34 149.4 85 81.2
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 5.0e-33 145.2 164 47.6
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 5.6e-32 141.7 185 44.3
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 6.2e-31 138.3 82 73.2
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 8.0e-31 137.9 171 46.8
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 3.4e-29 132.5 101 60.4
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 1.4e-27 127.1 169 46.7
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 4.7e-23 112.1 169 42.0
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.4e-21 105.5 101 54.5
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 9.8e-21 104.4 53 84.9
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 1.6e-18 97.1 128 43.8
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 1.3e-17 94.0 117 45.3
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.3e-17 94.0 83 56.6
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 3.3e-16 89.4 80 57.5
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 3.4e-13 79.3 78 47.4
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 1.3e-12 77.4 59 61.0
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 4.9e-12 75.5 94 45.7
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.5e-08 63.9 179 29.6


User provided reference genes

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