Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 0.0e+00 1411.4 708 100.0
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.4e-296 1022.7 719 75.0
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 3.0e-296 1021.5 719 75.0
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 1.3e-294 1016.1 714 75.8
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 4.5e-292 1007.7 725 73.2
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 7.7e-292 1006.9 729 73.8
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.0e-256 888.6 679 70.5
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 5.4e-253 877.9 746 62.2
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 2.1e-249 865.9 745 62.0
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 1.7e-246 856.3 743 61.9
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 9.6e-226 787.3 750 58.4
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 2.1e-225 786.2 744 59.0
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 3.8e-222 775.4 744 57.8
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 1.6e-217 760.0 725 58.3
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 3.1e-216 755.7 812 53.3
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 5.3e-216 755.0 748 55.9
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 7.6e-215 751.1 750 56.1
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.5e-210 736.9 729 56.5
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.9e-210 736.5 729 55.8
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 7.4e-210 734.6 741 57.1
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 3.1e-208 729.2 749 54.9
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 6.0e-204 714.9 742 54.7
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 6.0e-204 714.9 733 55.3
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 1.8e-203 713.4 749 54.2
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 5.1e-203 711.8 742 54.9
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 3.3e-202 709.1 741 55.7
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.1e-201 706.4 741 55.3
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 3.7e-201 705.7 753 51.5
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 1.4e-200 703.7 736 53.0
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 3.1e-200 702.6 704 56.8
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 9.0e-200 701.0 742 52.3
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 7.6e-199 698.0 669 58.4
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 1.9e-197 693.3 745 51.7
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 9.3e-197 691.0 744 52.6
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 4.3e-194 682.2 729 52.3
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 2.4e-192 676.4 735 53.2
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 4.1e-192 675.6 728 51.9
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 5.0e-190 668.7 724 52.2
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.0e-187 661.0 760 51.7
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 3.0e-187 659.4 745 49.5
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 3.9e-187 659.1 643 54.4
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 2.6e-183 646.4 737 50.1
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 2.9e-182 642.9 726 50.4
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 1.1e-181 641.0 717 51.6
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 6.1e-180 635.2 780 48.1
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 3.0e-179 632.9 777 47.7
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 1.1e-178 630.9 773 48.8
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 1.5e-178 630.6 668 53.4
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 2.2e-177 626.7 812 46.4
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 2.4e-176 623.2 746 48.4
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 5.3e-176 622.1 702 50.6
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.2e-175 620.9 735 49.0
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 3.4e-175 619.4 751 46.9
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.3e-174 617.5 714 50.0
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 7.2e-173 611.7 744 46.6
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 7.2e-173 611.7 736 48.1
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 2.1e-172 610.1 749 47.0
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 3.6e-172 609.4 745 46.7
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 7.9e-172 608.2 746 49.2
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.0e-171 607.8 755 47.8
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 6.7e-171 605.1 742 46.5
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 5.7e-170 602.1 487 67.1
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 1.7e-169 600.5 749 46.2
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 7.0e-168 595.1 749 45.9
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.6e-167 593.2 732 47.3
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 1.7e-166 590.5 735 46.3
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 1.9e-165 587.0 725 48.1
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 2.5e-165 586.6 782 44.4
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 2.1e-164 583.6 717 48.8
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 1.8e-163 580.5 717 49.0
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 4.0e-163 579.3 733 47.5
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.7e-161 573.9 799 43.4
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 1.7e-161 573.9 689 48.8
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.8e-160 570.5 610 53.0
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 6.1e-156 555.4 719 44.9
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 2.6e-154 550.1 744 42.9
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 3.5e-151 539.7 739 43.3
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.0e-150 538.1 736 43.6
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 6.5e-150 535.4 701 44.8
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 1.8e-147 527.3 732 41.7
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 7.5e-138 495.4 685 42.6
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 1.4e-136 491.1 563 49.9
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.0e-135 487.3 549 50.6
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 2.1e-132 477.2 539 51.4
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 5.8e-130 469.2 523 50.1
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.1e-128 464.9 493 54.6
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 4.1e-128 463.0 548 50.0
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.6e-124 449.9 577 47.7
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 7.5e-122 442.2 709 40.1
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 4.1e-120 436.4 427 57.4
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.9e-113 413.7 349 63.0
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 7.3e-109 399.1 441 51.0
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 8.9e-107 392.1 425 51.3
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 2.6e-106 390.6 543 43.5
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 4.4e-106 389.8 346 59.8
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 8.4e-97 359.0 344 56.7
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 2.8e-92 344.0 682 33.7
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.5e-90 338.2 369 52.0
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.3e-89 335.1 276 65.6
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 3.2e-88 330.5 340 53.2
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 7.1e-88 329.3 347 53.6
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.2e-87 328.6 355 52.7
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 2.1e-87 327.8 785 29.3
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 1.5e-82 311.6 299 55.5
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 2.5e-77 294.3 956 27.3
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 9.0e-75 285.8 693 29.4
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.3e-60 238.8 198 62.6
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 2.6e-58 231.1 702 32.1
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 2.2e-57 228.0 236 55.5
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 1.4e-56 225.3 257 52.9
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 1.8e-54 218.4 279 46.6
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 2.3e-54 218.0 248 49.2
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 2.0e-53 214.9 160 68.8
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 4.4e-53 213.8 163 68.1
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.4e-51 208.0 273 45.1
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 9.1e-51 206.1 695 29.5
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 8.5e-49 199.5 160 61.9
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 2.6e-45 188.0 890 22.7
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.1e-43 180.6 165 57.6
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 8.6e-25 119.8 96 56.2
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 4.3e-24 117.5 259 35.5
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 7.5e-21 106.7 98 61.2
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 2.9e-20 104.8 168 38.1
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 1.5e-13 82.4 334 27.2
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 6.4e-12 77.0 154 33.1
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 1.1e-11 76.3 170 31.8
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 1.9e-08 65.5 59 57.6
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 8.1e-07 60.1 179 30.7
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 1.8e-06 58.9 128 33.6
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 8.9e-06 56.6 91 41.8
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 8.9e-06 56.6 35 71.4


User provided reference genes

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