Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1017500 Malus domestica HOM05D000912 ORTHO05D008392 5.0e-94 347.8 182 100.0
MD09G1169900 Malus domestica HOM05D000912 ORTHO05D008392 2.3e-22 109.8 57 93.0
MD07G1024000 Malus domestica HOM05D000912 ORTHO05D008392 9.6e-21 104.4 97 62.9
Prupe.3G028100 Prunus persica HOM05D000912 ORTHO05D008392 3.6e-20 102.4 57 84.2
MD07G1024200 Malus domestica HOM05D000912 ORTHO05D008392 4.8e-20 102.1 57 87.7
FvH4_6g36340 Fragaria vesca HOM05D000912 ORTHO05D008392 2.4e-19 99.8 57 82.5
FAN05G3420 Fragaria x ananassa HOM05D000912 ORTHO05D001232 2.4e-19 99.8 57 82.5
FAN14G0321 Fragaria x ananassa HOM05D000912 ORTHO05D001232 2.4e-19 99.8 57 82.5
FAN14G4043 Fragaria x ananassa HOM05D000912 ORTHO05D001232 2.4e-19 99.8 57 82.5
RcHm_v2.0_Chr2g0148341 Rosa chinensis HOM05D000912 ORTHO05D008392 2.4e-19 99.8 57 82.5
FAN02G2903 Fragaria x ananassa HOM05D000912 ORTHO05D001232 6.9e-19 98.2 57 80.7
FAN09G3798 Fragaria x ananassa HOM05D000912 ORTHO05D001232 2.0e-18 96.7 57 80.7
Medtr4g005070 Medicago truncatula HOM05D000912 ORTHO05D008392 7.6e-18 94.7 57 75.4
CiPaw.01G092100 Carya illinoinensis HOM05D000912 ORTHO05D008392 1.3e-17 94.0 58 72.4
Cfa002159 Carpinus fangiana HOM05D000912 ORTHO05D008392 2.9e-17 92.8 57 71.9
MBI16_g40724_MAGBIO Magnolia biondii HOM05D000912 ORTHO05D008392 2.9e-17 92.8 57 73.7
Aqoxy7G02558 Aquilegia oxysepala HOM05D000912 ORTHO05D008392 3.8e-17 92.4 57 73.7
Haze_16247 Corylus avellana HOM05D000912 ORTHO05D008392 3.8e-17 92.4 57 71.9
THA.LOC104813622 Tarenaya hassleriana HOM05D000912 ORTHO05D008392 6.4e-17 91.7 57 73.7
Gohir.D05G117700 Gossypium hirsutum HOM05D000912 ORTHO05D008392 8.4e-17 91.3 57 75.4
Gorai.009G121600 Gossypium raimondii HOM05D000912 ORTHO05D008392 8.4e-17 91.3 57 75.4
Atru.chr3.4083 Acer truncatum HOM05D000912 ORTHO05D001086 1.1e-16 90.9 57 71.9
C05p14990 Brassica napus HOM05D000912 ORTHO05D008392 1.1e-16 90.9 57 75.4
Gohir.A05G116800 Gossypium hirsutum HOM05D000912 ORTHO05D008392 1.1e-16 90.9 79 60.8
Thecc.06G049200 Theobroma cacao HOM05D000912 ORTHO05D008392 1.1e-16 90.9 57 71.9
CANSAT01G2443 Cannabis sativa HOM05D000912 ORTHO05D008392 1.4e-16 90.5 58 70.7
Lj3g0002366 Lotus japonicus HOM05D000912 ORTHO05D008392 1.4e-16 90.5 57 71.9
Psat7g264640 Pisum sativum HOM05D000912 ORTHO05D008392 1.4e-16 90.5 58 69.0
AL1G28890 Arabidopsis lyrata HOM05D000912 ORTHO05D008392 1.9e-16 90.1 57 75.4
arahy.Tifrunner.gnm1.ann1.1L678P Arachis hypogaea HOM05D000912 ORTHO05D008392 1.9e-16 90.1 57 73.7
arahy.Tifrunner.gnm1.ann1.400PFG Arachis hypogaea HOM05D000912 ORTHO05D008392 1.9e-16 90.1 57 73.7
CDE05G1860 Ceratophyllum demersum HOM05D000912 ORTHO05D008392 1.9e-16 90.1 57 71.9
Eucgr.F04061 Eucalyptus grandis HOM05D000912 ORTHO05D008392 1.9e-16 90.1 57 71.9
Cpa.g.sc4293.2 Carica papaya HOM05D000912 ORTHO05D008392 2.4e-16 89.7 57 71.9
ClCG05G010460 Citrullus lanatus HOM05D000912 ORTHO05D008392 2.4e-16 89.7 57 70.2
Oeu007970.1 Olea europaea HOM05D000912 ORTHO05D008392 2.4e-16 89.7 57 73.7
Sed0004063 Sechium edule HOM05D000912 ORTHO05D008392 2.4e-16 89.7 57 70.2
AT1G16720 Arabidopsis thaliana HOM05D000912 ORTHO05D008392 3.2e-16 89.4 57 73.7
BcaC05g25533 Brassica carinata HOM05D000912 ORTHO05D008392 3.2e-16 89.4 57 73.7
A06p12690 Brassica napus HOM05D000912 ORTHO05D008392 3.2e-16 89.4 57 73.7
BolC5t30214H Brassica oleracea HOM05D000912 ORTHO05D008392 3.2e-16 89.4 57 73.7
BraA06t24429Z Brassica rapa HOM05D000912 ORTHO05D008392 3.2e-16 89.4 57 73.7
Ciclev10028057m.g Citrus clementina HOM05D000912 ORTHO05D008392 3.2e-16 89.4 58 67.2
Sp1g14870 Schrenkiella parvula HOM05D000912 ORTHO05D008392 3.2e-16 89.4 57 73.7
CARHR017180 Cardamine hirsuta HOM05D000912 ORTHO05D008392 4.2e-16 89.0 57 73.7
CsaV3_3G018030 Cucumis sativus L. HOM05D000912 ORTHO05D008392 4.2e-16 89.0 57 70.2
Duzib235G1169 Durio zibethinus HOM05D000912 ORTHO05D008392 4.2e-16 89.0 57 70.2
Nn8g41283 Nelumbo nucifera HOM05D000912 ORTHO05D008392 4.2e-16 89.0 57 71.9
unitig_26.g9061 Utricularia gibba HOM05D000912 ORTHO05D008392 4.2e-16 89.0 57 71.9
Thhalv10007626m.g Eutrema salsugineum HOM05D000912 ORTHO05D008392 5.4e-16 88.6 57 73.7
Nitab4.5_0000348g0140 Nicotiana tabacum HOM05D000912 ORTHO05D008392 5.4e-16 88.6 57 71.9
Nitab4.5_0001070g0120 Nicotiana tabacum HOM05D000912 ORTHO05D008392 5.4e-16 88.6 57 71.9
PSO063G4559 Papaver somniferum HOM05D000912 ORTHO05D008392 5.4e-16 88.6 57 71.9
PSO170G5414 Papaver somniferum HOM05D000912 ORTHO05D008392 5.4e-16 88.6 57 71.9
Potri.014G000400 Populus trichocarpa HOM05D000912 ORTHO05D008392 5.4e-16 88.6 57 70.2
Sabra14G0003000 Salix brachista HOM05D000912 ORTHO05D008392 5.4e-16 88.6 57 70.2
Sopen08g006330 Solanum pennellii HOM05D000912 ORTHO05D008392 5.4e-16 88.6 57 71.9
PGSC0003DMG400007658 Solanum tuberosum HOM05D000912 ORTHO05D008392 5.4e-16 88.6 57 71.9
Cc11_g00030 Coffea canephora HOM05D000912 ORTHO05D008392 7.1e-16 88.2 57 70.2
COL.COLO4_26806 Corchorus olitorius HOM05D000912 ORTHO05D008392 7.1e-16 88.2 57 71.9
Peaxi162Scf01205g00156 Petunia axillaris HOM05D000912 ORTHO05D008392 7.1e-16 88.2 57 71.9
SalBow5G0605 Salvia bowleyana HOM05D000912 ORTHO05D008392 7.1e-16 88.2 57 71.9
SalBow5G2613 Salvia bowleyana HOM05D000912 ORTHO05D008392 7.1e-16 88.2 57 71.9
TAR626G1580 Trochodendron aralioides HOM05D000912 ORTHO05D008392 7.1e-16 88.2 57 70.2
HPP92_015272 Vanilla planifolia HOM05D000912 ORTHO05D008392 7.1e-16 88.2 57 68.4
Carub.0001s1646 Capsella rubella HOM05D000912 ORTHO05D008392 9.3e-16 87.8 57 73.7
MELO3C019564.2 Cucumis melo HOM05D000912 ORTHO05D008392 9.3e-16 87.8 57 68.4
Potri.007G003500 Populus trichocarpa HOM05D000912 ORTHO05D008392 9.3e-16 87.8 57 70.2
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 9.3e-16 87.8 57 70.2
ATR0626G080 Amborella trichopoda HOM05D000912 ORTHO05D008392 1.2e-15 87.4 57 70.2
CSS0011648 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D008392 1.2e-15 87.4 57 68.4
CSS0042059 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D008392 1.2e-15 87.4 57 68.4
Dinv37770 Davidia involucrata HOM05D000912 ORTHO05D008392 1.2e-15 87.4 57 68.4
Hund18549 Selenicereus undatus HOM05D000912 ORTHO05D008392 1.2e-15 87.4 57 71.9
Aa31LG7G1180 Aethionema arabicum HOM05D000912 ORTHO05D008392 1.6e-15 87.0 57 71.9
CAN.G68.13 Capsicum annuum HOM05D000912 ORTHO05D008392 1.6e-15 87.0 99 51.5
AUR62025686 Chenopodium quinoa HOM05D000912 ORTHO05D008392 2.1e-15 86.7 57 70.2
SGA_v2.0_scaffold14G07132 Striga asiatica HOM05D000912 ORTHO05D008392 2.1e-15 86.7 57 70.2
DCAR_028447 Daucus carota HOM05D000912 ORTHO05D008392 2.7e-15 86.3 59 67.8
Glyma.08G226600 Glycine max HOM05D000912 ORTHO05D008392 2.7e-15 86.3 57 68.4
VMungo0331G0828 Vigna mungo HOM05D000912 ORTHO05D008392 2.7e-15 86.3 57 70.2
AUR62001304 Chenopodium quinoa HOM05D000912 ORTHO05D008392 3.5e-15 85.9 57 70.2
Hma1.2p1_0073F.1_g038580 Hydrangea macrophylla HOM05D000912 ORTHO05D008392 3.5e-15 85.9 57 66.7
Manes.06G180101 Manihot esculenta HOM05D000912 ORTHO05D008392 3.5e-15 85.9 57 68.4
ECA229G0002 Erigeron canadensis HOM05D000912 ORTHO05D008392 4.6e-15 85.5 57 68.4
ECA232G1388 Erigeron canadensis HOM05D000912 ORTHO05D008392 4.6e-15 85.5 57 68.4
ECA233G4728 Erigeron canadensis HOM05D000912 ORTHO05D008392 4.6e-15 85.5 57 68.4
Phvul.010G165800 Phaseolus vulgaris HOM05D000912 ORTHO05D008392 4.6e-15 85.5 57 70.2
TPR.G38709 Trifolium pratense HOM05D000912 ORTHO05D008392 4.6e-15 85.5 57 66.7
Lalb_Chr04g0264781 Lupinus albus HOM05D000912 ORTHO05D008392 6.0e-15 85.1 56 69.6
TWI75G1320 Tripterygium wilfordii HOM05D000912 ORTHO05D008392 6.0e-15 85.1 57 66.7
EL10Ac7g18104 Beta vulgaris HOM05D000912 ORTHO05D008392 7.9e-15 84.7 57 68.4
GSVIVG01029443001 Vitis vinifera HOM05D000912 ORTHO05D008392 7.9e-15 84.7 57 68.4
QL05p085123 Quercus lobata HOM05D000912 ORTHO05D008392 1.0e-14 84.3 57 68.4
MSTRG.16592 Avicennia marina HOM05D000912 ORTHO05D008392 1.3e-14 84.0 57 71.9
SEGI_09830 Sequoiadendron giganteum HOM05D000912 ORTHO05D008392 1.3e-14 84.0 57 68.4
vmacro18721 Vaccinium macrocarpon HOM05D000912 ORTHO05D008392 1.3e-14 84.0 57 68.4
Actinidia21901 Actinidia chinensis HOM05D000912 ORTHO05D008392 1.8e-14 83.6 57 66.7
Lj9A544G34 Lonicera japonica HOM05D000912 ORTHO05D008392 1.8e-14 83.6 57 66.7
Pp3c25_2890 Physcomitrium patens HOM05D000912 ORTHO05D008392 1.8e-14 83.6 57 68.4
Rhsim08G0252400 Rhododendron simsii HOM05D000912 ORTHO05D008392 1.8e-14 83.6 57 66.7
Rhsim08G0252600 Rhododendron simsii HOM05D000912 ORTHO05D008392 1.8e-14 83.6 57 66.7
Glyma.07G000500 Glycine max HOM05D000912 ORTHO05D008392 3.0e-14 82.8 57 66.7
Lsat_1_v5_gn_4_106121 Lactuca sativa HOM05D000912 ORTHO05D008392 3.0e-14 82.8 57 66.7
Migut.B00598 Erythranthe guttata HOM05D000912 ORTHO05D008392 5.1e-14 82.0 57 66.7
Os06g0704700 Oryza sativa ssp. japonica HOM05D000912 ORTHO05D008392 5.1e-14 82.0 57 68.4
Os02g0137700 Oryza sativa ssp. japonica HOM05D000912 ORTHO05D008392 8.7e-14 81.3 57 66.7
Zm00001eb227320 Zea mays HOM05D000912 ORTHO05D008392 8.7e-14 81.3 57 68.4
HanXRQChr09g0277451 Helianthus annuus HOM05D000912 ORTHO05D008392 1.5e-13 80.5 57 64.9
Mapoly0022s0049 Marchantia polymorpha HOM05D000912 ORTHO05D008392 1.9e-13 80.1 57 64.9
Pp3c16_11160 Physcomitrium patens HOM05D000912 ORTHO05D008392 1.9e-13 80.1 57 64.9
CBR_g46441 Chara braunii HOM05D000912 ORTHO05D008392 6.2e-12 75.1 59 64.4
SMO337G0061 Selaginella moellendorffii HOM05D000912 ORTHO05D008392 1.1e-11 74.3 57 59.6
BcaC05g24902 Brassica carinata HOM05D000912 ORTHO05D008392 7.6e-10 68.2 46 71.7
C05p08430 Brassica napus HOM05D000912 ORTHO05D008392 7.6e-10 68.2 46 71.7
BolC5t29594H Brassica oleracea HOM05D000912 ORTHO05D008392 7.6e-10 68.2 46 71.7
Ca_03787_v3 Cicer arietinum L. HOM05D000912 ORTHO05D008392 2.2e-09 66.6 57 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4434 Anthoceros agrestis HOM05D000912 ORTHO05D008392 2.9e-09 66.2 57 52.6
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 3.9e-06 55.8 33 75.8
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 6.7e-06 55.1 33 81.8
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 8.7e-06 54.7 33 78.8
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 8.7e-06 54.7 33 78.8


User provided reference genes

Program Settings