Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 7.4e-286 986.5 488 100.0
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 6.3e-277 956.8 488 96.7
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.7e-251 871.7 488 88.1
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.4e-215 753.1 501 74.9
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.9e-213 745.3 489 74.4
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 8.4e-213 743.8 500 73.6
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.2e-205 719.2 489 73.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.7e-202 709.5 489 71.2
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 3.0e-202 708.8 492 71.5
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 3.9e-202 708.4 489 72.0
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.9e-201 706.1 494 71.7
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.6e-200 703.0 489 71.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 9.0e-199 697.2 492 70.5
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.6e-198 695.7 492 69.7
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.7e-197 693.0 492 69.5
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.2e-197 692.6 489 70.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.4e-196 689.1 491 68.4
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.4e-196 689.1 489 70.3
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.3e-196 687.2 491 68.2
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 9.3e-196 687.2 498 69.5
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.1e-192 676.0 489 68.3
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.1e-192 676.0 491 68.6
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.3e-189 666.8 399 78.9
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.2e-189 666.0 479 69.5
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.9e-189 665.6 443 73.1
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 3.8e-189 665.2 489 67.5
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 8.4e-189 664.1 489 67.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 8.4e-189 664.1 492 67.9
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.4e-188 663.3 479 69.9
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 3.2e-188 662.1 490 67.8
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 9.3e-188 660.6 491 67.8
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 6.0e-187 657.9 480 69.6
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 7.9e-187 657.5 495 66.5
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.0e-186 657.1 741 50.5
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.3e-186 656.8 480 69.0
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.3e-186 656.8 489 65.0
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.0e-186 655.6 490 67.6
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 3.3e-185 652.1 492 67.1
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.1e-184 649.4 490 66.7
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.1e-184 649.4 490 66.7
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.8e-184 648.3 490 66.3
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-183 647.1 492 66.7
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 7.1e-180 634.4 399 75.9
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 2.1e-179 632.9 489 65.4
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 8.7e-178 627.5 489 63.4
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 4.3e-177 625.2 495 65.1
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.8e-176 622.5 489 63.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.8e-176 621.7 489 63.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.4e-175 619.4 557 57.3
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 2.0e-174 616.3 462 66.0
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.6e-174 615.9 474 65.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.5e-173 611.3 500 62.2
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.2e-171 607.1 458 65.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.8e-170 603.2 410 69.8
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.8e-170 603.2 492 63.8
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.3e-170 602.8 458 64.0
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 4.3e-169 598.6 461 64.2
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.6e-168 596.7 438 68.7
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.6e-168 596.7 489 61.6
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.8e-168 595.9 478 63.4
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 5.3e-167 591.7 490 63.3
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-166 589.7 489 61.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 8.5e-165 584.3 473 60.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.1e-164 583.9 433 70.2
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.1e-164 583.9 432 69.9
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.4e-164 583.6 491 59.7
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.1e-163 579.7 461 64.2
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.3e-162 576.2 453 65.3
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.0e-162 575.9 433 69.3
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.0e-161 573.2 490 59.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.7e-161 571.6 433 68.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.7e-160 570.1 497 59.4
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 4.8e-160 568.5 429 69.0
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.8e-160 568.5 560 53.4
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.3e-160 568.2 411 70.3
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.4e-159 566.2 467 60.2
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.6e-158 562.8 487 58.7
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 7.7e-158 561.2 484 57.9
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.7e-157 560.1 484 57.6
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 2.9e-157 559.3 398 68.1
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.5e-157 558.1 499 58.7
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 8.5e-157 557.8 415 66.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 7.2e-156 554.7 403 67.2
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 7.2e-156 554.7 406 65.5
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.6e-155 553.5 516 56.2
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.6e-155 553.5 489 57.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.1e-155 553.1 317 80.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 4.7e-155 552.0 490 57.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 6.1e-155 551.6 406 65.0
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 7.9e-155 551.2 490 56.9
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.4e-154 550.4 477 60.2
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 2.3e-154 549.7 404 65.1
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 8.8e-154 547.7 500 59.0
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.4e-153 545.4 535 55.9
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 9.7e-153 544.3 477 60.0
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.2e-152 543.1 512 57.4
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.8e-152 542.7 506 58.1
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.8e-152 542.0 491 56.6
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.4e-151 539.7 491 58.0
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.4e-151 539.7 445 59.6
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.4e-151 539.7 429 60.6
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.2e-150 537.3 407 66.1
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 2.0e-150 536.6 495 57.4
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 7.7e-150 534.6 362 73.2
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.0e-149 534.3 431 60.1
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.3e-149 533.9 404 65.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.2e-149 533.1 431 60.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.2e-149 533.1 431 60.1
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 5.0e-149 531.9 404 63.4
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 9.4e-148 527.7 485 56.5
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 2.7e-147 526.2 504 57.5
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.6e-147 525.8 404 62.1
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 4.7e-147 525.4 360 67.2
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 6.1e-147 525.0 364 71.4
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.8e-146 523.5 435 59.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 3.0e-146 522.7 557 53.7
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 3.0e-146 522.7 497 56.3
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-145 520.8 429 60.1
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.6e-145 519.6 400 64.8
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 3.3e-145 519.2 490 55.1
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 5.7e-145 518.5 490 54.7
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 7.5e-145 518.1 488 54.5
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.3e-144 517.3 398 64.3
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 3.7e-144 515.8 432 59.0
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 6.3e-144 515.0 444 57.2
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 6.3e-144 515.0 444 57.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 6.3e-144 515.0 444 57.2
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 8.2e-144 514.6 404 62.4
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.7e-142 509.6 498 54.0
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.9e-141 506.1 471 57.5
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 5.0e-141 505.4 515 52.4
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 9.4e-140 501.1 407 60.9
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 2.1e-139 500.0 463 55.7
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 2.7e-139 499.6 463 55.7
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.7e-139 499.6 404 60.4
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 3.6e-139 499.2 604 47.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.8e-135 486.9 484 53.7
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.7e-134 483.0 489 53.8
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 9.5e-132 474.6 405 58.0
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 6.1e-131 471.9 373 62.2
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.9e-128 462.2 402 57.0
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.8e-127 460.3 377 64.2
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 9.8e-121 438.0 311 67.5
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.5e-118 429.5 402 53.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.5e-116 423.3 403 53.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 6.0e-110 402.1 375 55.2
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.1e-91 340.5 220 71.8
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.5e-89 334.3 319 55.8
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.6e-83 314.3 279 59.9
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 7.1e-79 298.9 230 63.9
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 9.3e-79 298.5 251 61.4
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.6e-76 289.3 223 65.9
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.8e-75 287.0 220 60.5
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 2.4e-66 257.3 238 55.5
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.9e-66 255.8 416 41.6
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 2.2e-64 250.8 311 43.7
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.3e-53 214.2 302 40.1
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.6e-49 200.7 485 33.2
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.4e-39 168.3 265 40.8
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 3.0e-37 160.6 155 54.8
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 5.9e-33 146.4 116 56.9
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.9e-32 144.1 215 40.9
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.5e-31 139.8 144 50.0
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.1e-30 137.9 286 31.8
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.7e-30 136.7 99 65.7
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.8e-29 134.8 653 23.3
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.1e-23 115.5 123 51.2
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-20 105.5 113 52.2
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-17 95.1 104 49.0
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 4.2e-15 87.0 236 33.1
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.8e-13 79.7 70 55.7
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.6e-12 77.8 362 26.2
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 2.9e-08 64.3 74 50.0
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.3e-07 60.5 47 57.4


User provided reference genes

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