Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 1.5e-68 263.5 217 100.0
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 6.4e-40 168.3 227 46.3
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 1.4e-39 167.2 267 64.8
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 1.9e-39 166.8 269 65.4
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 7.1e-39 164.9 269 65.4
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 7.1e-39 164.9 269 63.6
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 9.3e-39 164.5 269 65.1
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 1.2e-38 164.1 269 64.3
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 2.1e-38 163.3 269 63.9
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 2.1e-38 163.3 269 64.7
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 2.1e-38 163.3 269 66.9
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 2.7e-38 162.9 267 66.7
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 3.9e-37 159.1 267 65.9
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 5.1e-37 158.7 267 65.2
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 8.7e-37 157.9 267 63.7
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 5.6e-36 155.2 269 64.7
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 7.4e-36 154.8 269 64.7
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 1.6e-35 153.7 269 64.3
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 1.6e-35 153.7 269 64.3
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 4.8e-35 152.1 269 63.9
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 4.8e-35 152.1 269 63.6
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 4.8e-35 152.1 269 63.9
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 6.2e-35 151.8 269 63.2
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 8.1e-35 151.4 269 63.2
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 8.1e-35 151.4 269 63.9
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 8.1e-35 151.4 269 63.9
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 8.1e-35 151.4 269 63.9
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 1.1e-34 151.0 269 63.6
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 1.1e-34 151.0 268 63.8
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 1.8e-34 150.2 269 63.6
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 2.4e-34 149.8 269 63.2
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 2.4e-34 149.8 268 63.4
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 4.0e-34 149.1 269 62.8
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 4.0e-34 149.1 269 63.6
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 6.9e-34 148.3 269 62.1
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 9.0e-34 147.9 269 62.5
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 9.0e-34 147.9 269 61.7
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 3.4e-33 146.0 269 62.1
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 5.8e-33 145.2 268 62.7
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 7.6e-33 144.8 269 61.7
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 1.3e-32 144.1 267 62.5
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 2.9e-32 142.9 267 62.2
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 3.8e-32 142.5 269 60.6
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 4.9e-32 142.1 269 59.9
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 6.5e-32 141.7 269 61.0
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 8.4e-32 141.4 269 59.9
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 1.4e-31 140.6 267 61.8
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 3.2e-31 139.4 267 61.0
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 5.5e-31 138.7 270 61.5
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 5.5e-31 138.7 269 61.0
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 7.1e-31 138.3 269 60.6
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.5e-30 136.0 269 61.0
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.6e-30 135.6 269 61.0
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 6.0e-30 135.2 268 59.3
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 7.9e-30 134.8 270 60.7
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 7.9e-30 134.8 269 61.7
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 3.0e-29 132.9 269 60.2
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 3.9e-29 132.5 269 60.6
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 3.9e-29 132.5 269 60.6
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 3.9e-29 132.5 269 60.6
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 5.1e-29 132.1 268 60.1
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 5.1e-29 132.1 269 58.7
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 6.7e-29 131.7 268 60.4
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 6.7e-29 131.7 268 60.4
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 8.7e-29 131.3 269 60.2
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 1.5e-28 130.6 269 58.0
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 1.9e-28 130.2 268 59.7
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 2.5e-28 129.8 269 60.2
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 3.3e-28 129.4 269 60.2
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 4.3e-28 129.0 265 59.6
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 1.3e-27 127.5 268 60.1
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.1e-27 126.7 264 61.0
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.8e-27 126.3 62 98.4
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 3.7e-27 125.9 265 58.9
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 3.7e-27 125.9 265 58.9
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 3.7e-27 125.9 244 50.0
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 6.3e-27 125.2 269 59.1
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 8.2e-27 124.8 268 59.3
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 1.4e-26 124.0 268 58.6
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 1.4e-26 124.0 268 58.6
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 1.8e-26 123.6 265 58.5
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 1.8e-26 123.6 63 96.8
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 2.4e-26 123.2 291 35.1
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 2.4e-26 123.2 265 58.5
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 4.1e-26 122.5 268 58.6
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 4.1e-26 122.5 268 58.6
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 4.1e-26 122.5 268 58.6
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 4.1e-26 122.5 63 95.2
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 1.5e-25 120.6 268 58.2
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 2.0e-25 120.2 266 57.9
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 2.0e-25 120.2 272 58.1
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 2.6e-25 119.8 62 91.9
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 5.9e-25 118.6 306 44.4
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 7.6e-25 118.2 64 89.1
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 1.0e-24 117.9 63 92.1
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.0e-24 117.9 269 56.1
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 1.3e-24 117.5 269 59.1
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 1.3e-24 117.5 62 90.3
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 1.7e-24 117.1 64 87.5
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 5.0e-24 115.5 268 56.7
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 6.5e-24 115.2 63 85.7
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.1e-23 114.4 63 85.7
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 1.1e-23 114.4 63 85.7
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 2.5e-23 113.2 63 85.7
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 2.5e-23 113.2 63 84.1
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 4.2e-23 112.5 271 43.2
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.1e-22 110.2 70 80.0
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 1.3e-21 107.5 255 57.6
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 1.9e-20 103.6 63 77.8
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.8e-18 97.1 66 72.7
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 3.1e-18 96.3 267 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 1.2e-17 94.4 61 70.5
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.0e-16 91.3 100 51.0
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 1.7e-16 90.5 297 49.8
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 5.0e-16 89.0 73 64.4
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 4.2e-15 85.9 73 60.3
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 3.6e-14 82.8 82 52.4
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 7.9e-14 81.6 269 50.9
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 7.9e-14 81.6 310 48.1
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 1.4e-13 80.9 96 47.9
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 3.0e-13 79.7 41 90.2
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 6.7e-13 78.6 82 50.0
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 1.1e-12 77.8 63 65.1
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 3.3e-12 76.3 83 50.6
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 5.7e-12 75.5 73 54.8
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 8.2e-11 71.6 59 47.5
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 5.3e-10 68.9 62 48.4
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 1.2e-09 67.8 60 46.7
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 1.2e-09 67.8 243 53.1
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 2.6e-09 66.6 61 47.5
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 3.4e-09 66.2 62 46.8
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 5.0e-08 62.4 62 43.5
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-07 60.5 31 90.3
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 2.5e-07 60.1 74 41.9
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 3.2e-07 59.7 60 40.0
Ah.11g047980 Amaranthus hybridus HOM05D006238 ORTHO05D007458 2.1e-06 57.0 53 60.4
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 4.7e-06 55.8 60 45.0
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 7.9e-06 55.1 61 44.3


User provided reference genes

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