Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1157100 Malus domestica HOM05D006543 ORTHO05D008308 1.7e-34 148.7 71 100.0
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 7.8e-27 123.2 70 82.9
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 2.2e-21 105.1 70 72.9
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 1.3e-10 69.3 70 52.9
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 2.3e-10 68.6 77 48.1
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.1e-09 66.2 73 50.7
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 1.9e-09 65.5 70 52.9
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.5e-09 65.1 74 50.0
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 3.3e-09 64.7 78 52.6
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 4.3e-09 64.3 69 50.7
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 5.6e-09 63.9 69 52.2
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 7.3e-09 63.5 74 51.4
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 7.3e-09 63.5 70 50.0
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 7.3e-09 63.5 70 48.6
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 1.2e-08 62.8 74 48.6
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 1.6e-08 62.4 73 50.7
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 2.8e-08 61.6 70 51.4
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 2.8e-08 61.6 70 52.9
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 3.6e-08 61.2 75 48.0
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 4.7e-08 60.8 70 48.6
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 6.2e-08 60.5 75 45.3
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 6.2e-08 60.5 70 50.0
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 6.2e-08 60.5 70 48.6
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 8.1e-08 60.1 76 48.7
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 1.1e-07 59.7 70 45.7
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 1.4e-07 59.3 72 54.2
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 2.4e-07 58.5 70 48.6
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 2.4e-07 58.5 73 47.9
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 2.4e-07 58.5 76 50.0
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 2.4e-07 58.5 70 47.1
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 3.1e-07 58.2 70 42.9
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 3.1e-07 58.2 70 48.6
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 3.1e-07 58.2 71 49.3
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 4.0e-07 57.8 70 44.3
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 4.0e-07 57.8 70 48.6
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 4.0e-07 57.8 71 46.5
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 5.2e-07 57.4 70 50.0
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 8.9e-07 56.6 70 44.3
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.2e-06 56.2 70 44.3
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.2e-06 56.2 70 44.3
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 1.2e-06 56.2 73 46.6
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 1.2e-06 56.2 73 45.2
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.2e-06 56.2 70 50.0
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 1.5e-06 55.8 70 44.3
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.5e-06 55.8 70 44.3
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 1.5e-06 55.8 70 44.3
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 1.5e-06 55.8 83 42.2
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 1.5e-06 55.8 70 47.1
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 1.5e-06 55.8 75 49.3
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 2.0e-06 55.5 70 44.3
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 2.0e-06 55.5 70 45.7
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 2.0e-06 55.5 73 43.8
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 3.4e-06 54.7 71 47.9
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 3.4e-06 54.7 70 41.4
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 4.4e-06 54.3 75 45.3
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 5.8e-06 53.9 66 43.9
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 7.6e-06 53.5 75 45.3
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 9.9e-06 53.1 81 44.4
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 9.9e-06 53.1 70 40.0
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 9.9e-06 53.1 82 41.5
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 9.9e-06 53.1 74 45.9


User provided reference genes

Program Settings