Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1131300 Malus domestica HOM05D007048 ORTHO05D008811 1.7e-64 249.2 129 100.0
Prupe.5G142300 Prunus persica HOM05D007048 ORTHO05D008811 1.2e-57 226.5 129 90.7
Dinv23221 Davidia involucrata HOM05D007048 ORTHO05D008811 1.1e-50 203.4 127 78.7
RcHm_v2.0_Chr7g0188741 Rosa chinensis HOM05D007048 ORTHO05D008811 4.1e-50 201.4 127 80.3
Cfa018710 Carpinus fangiana HOM05D007048 ORTHO05D008811 7.0e-50 200.7 123 82.1
FAN18G3224 Fragaria x ananassa HOM05D007048 ORTHO05D008811 1.6e-49 199.5 129 79.8
Haze_07101 Corylus avellana HOM05D007048 ORTHO05D008811 2.0e-49 199.1 126 81.0
Actinidia18303 Actinidia chinensis HOM05D007048 ORTHO05D008811 7.7e-49 197.2 127 75.6
GSVIVG01008645001 Vitis vinifera HOM05D007048 ORTHO05D008811 7.7e-49 197.2 128 78.9
Manes.14G045100 Manihot esculenta HOM05D007048 ORTHO05D008811 2.2e-48 195.7 126 78.6
CiPaw.11G000300 Carya illinoinensis HOM05D007048 ORTHO05D008811 5.0e-48 194.5 125 80.0
Sabra15G0126100 Salix brachista HOM05D007048 ORTHO05D008811 8.5e-48 193.7 129 74.4
TAR475G0007 Trochodendron aralioides HOM05D007048 ORTHO05D008811 1.1e-47 193.4 123 78.9
TAR629G1913 Trochodendron aralioides HOM05D007048 ORTHO05D008811 1.1e-47 193.4 123 78.9
Migut.D01184 Erythranthe guttata HOM05D007048 ORTHO05D008811 1.9e-47 192.6 127 74.8
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 5.5e-47 191.0 122 79.5
Hma1.2p1_0664F.1_g199000 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 9.4e-47 190.3 123 75.6
Thecc.03G140000 Theobroma cacao HOM05D007048 ORTHO05D008811 1.6e-46 189.5 128 76.6
TWI39G0039 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 1.6e-46 189.5 130 76.2
TWI14G0368 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 3.6e-46 188.3 127 74.8
Cpa.g.sc13.165 Carica papaya HOM05D007048 ORTHO05D008811 6.1e-46 187.6 124 76.6
FAN04G3007 Fragaria x ananassa HOM05D007048 ORTHO05D008811 1.0e-45 186.8 123 78.9
SalBow1G8421 Salvia bowleyana HOM05D007048 ORTHO05D008811 3.0e-45 185.3 128 73.4
Potri.015G105900 Populus trichocarpa HOM05D007048 ORTHO05D008811 4.0e-45 184.9 123 75.6
Rhsim08G0196900 Rhododendron simsii HOM05D007048 ORTHO05D008811 4.0e-45 184.9 117 78.6
Cc04_g05890 Coffea canephora HOM05D007048 ORTHO05D008811 1.5e-44 183.0 129 69.8
Ciclev10033023m.g Citrus clementina HOM05D007048 ORTHO05D008811 2.6e-44 182.2 126 73.8
QL10p000556 Quercus lobata HOM05D007048 ORTHO05D008811 2.6e-44 182.2 121 76.9
vmacro19180 Vaccinium macrocarpon HOM05D007048 ORTHO05D008811 3.3e-44 181.8 123 76.4
Duzib068G0404 Durio zibethinus HOM05D007048 ORTHO05D008811 4.4e-44 181.4 126 75.4
MD14G1147700 Malus domestica HOM05D007048 ORTHO05D008811 9.7e-44 180.3 96 94.8
MELO3C035737.2 Cucumis melo HOM05D007048 ORTHO05D008811 1.7e-43 179.5 126 73.8
CsaV3_1G009910 Cucumis sativus L. HOM05D007048 ORTHO05D008811 1.7e-43 179.5 126 73.8
Atru.chr6.1912 Acer truncatum HOM05D007048 ORTHO05D008811 2.2e-43 179.1 124 71.0
ClCG03G004020 Citrullus lanatus HOM05D007048 ORTHO05D008811 2.2e-43 179.1 135 73.3
CANSAT56G3230 Cannabis sativa HOM05D007048 ORTHO05D008811 4.8e-43 177.9 129 72.1
CANSAT56G3502 Cannabis sativa HOM05D007048 ORTHO05D008811 1.8e-42 176.0 129 71.3
Sed0017197 Sechium edule HOM05D007048 ORTHO05D008811 2.4e-42 175.6 126 74.6
Gohir.D07G051200 Gossypium hirsutum HOM05D007048 ORTHO05D008811 5.3e-42 174.5 126 70.6
Gorai.001G054300 Gossypium raimondii HOM05D007048 ORTHO05D008811 5.3e-42 174.5 126 70.6
Gohir.A07G046900 Gossypium hirsutum HOM05D007048 ORTHO05D008811 1.2e-41 173.3 126 69.8
Peaxi162Scf01168g00014 Petunia axillaris HOM05D007048 ORTHO05D008811 2.0e-41 172.6 129 66.7
CAN.G521.6 Capsicum annuum HOM05D007048 ORTHO05D008811 2.7e-41 172.2 129 65.9
Hund10045 Selenicereus undatus HOM05D007048 ORTHO05D008811 1.0e-40 170.2 126 66.7
Sopen07g028330 Solanum pennellii HOM05D007048 ORTHO05D008820 1.3e-40 169.9 129 65.1
Aqoxy3G01543 Aquilegia oxysepala HOM05D007048 ORTHO05D008811 2.2e-40 169.1 116 70.7
Solyc07g054400.3 Solanum lycopersicum HOM05D007048 ORTHO05D008811 6.5e-40 167.5 129 65.1
Nitab4.5_0002584g0070 Nicotiana tabacum HOM05D007048 ORTHO05D008811 8.5e-40 167.2 134 64.2
AL8G25120 Arabidopsis lyrata HOM05D007048 ORTHO05D008811 1.1e-39 166.8 118 70.3
Nitab4.5_0003119g0030 Nicotiana tabacum HOM05D007048 ORTHO05D008811 1.1e-39 166.8 134 63.4
PSO339G2722 Papaver somniferum HOM05D007048 ORTHO05D008811 1.1e-39 166.8 122 66.4
EL10Ac5g11295 Beta vulgaris HOM05D007048 ORTHO05D008811 1.5e-39 166.4 120 69.2
PSO384G0987 Papaver somniferum HOM05D007048 ORTHO05D008811 1.5e-39 166.4 122 66.4
Sp6g13100 Schrenkiella parvula HOM05D007048 ORTHO05D008811 1.5e-39 166.4 125 68.0
PGSC0003DMG400018389 Solanum tuberosum HOM05D007048 ORTHO05D008811 1.5e-39 166.4 129 63.6
Sc22g0003410 Simmondsia chinensis HOM05D007048 ORTHO05D008811 2.5e-39 165.6 118 70.3
Thhalv10014960m.g Eutrema salsugineum HOM05D007048 ORTHO05D008811 3.2e-39 165.2 125 67.2
AT5G50930 Arabidopsis thaliana HOM05D007048 ORTHO05D008811 5.5e-39 164.5 118 70.3
Carub.0008s1094 Capsella rubella HOM05D007048 ORTHO05D008811 5.5e-39 164.5 125 68.8
A03p16450 Brassica napus HOM05D007048 ORTHO05D008811 7.2e-39 164.1 118 68.6
BraA03t10934Z Brassica rapa HOM05D007048 ORTHO05D008811 7.2e-39 164.1 118 68.6
SGA_v2.0_scaffold40G15679 Striga asiatica HOM05D007048 ORTHO05D008811 7.2e-39 164.1 148 59.5
BcaNung07188 Brassica carinata HOM05D007048 ORTHO05D008811 9.4e-39 163.7 118 68.6
C03p19340 Brassica napus HOM05D007048 ORTHO05D008811 9.4e-39 163.7 118 68.6
BolC3t14320H Brassica oleracea HOM05D007048 ORTHO05D008811 9.4e-39 163.7 118 68.6
CARHR257290 Cardamine hirsuta HOM05D007048 ORTHO05D008811 1.6e-38 162.9 126 67.5
Ah.02g114610 Amaranthus hybridus HOM05D007048 ORTHO05D008811 8.0e-38 160.6 124 64.5
Lalb_Chr08g0237541 Lupinus albus HOM05D007048 ORTHO05D008811 1.8e-37 159.5 127 66.9
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 5.2e-37 157.9 122 64.8
Aa31LG3G7430 Aethionema arabicum HOM05D007048 ORTHO05D008811 3.4e-36 155.2 121 63.6
MBI07_g41901_MAGBIO Magnolia biondii HOM05D007048 ORTHO05D008811 3.4e-36 155.2 124 62.1
arahy.Tifrunner.gnm1.ann1.QNIR3T Arachis hypogaea HOM05D007048 ORTHO05D008811 5.7e-36 154.5 118 65.3
HanXRQChr10g0316061 Helianthus annuus HOM05D007048 ORTHO05D008811 9.8e-36 153.7 125 64.8
Phvul.009G161500 Phaseolus vulgaris HOM05D007048 ORTHO05D008811 6.3e-35 151.0 113 67.3
PGR031G3844 Punica granatum HOM05D007048 ORTHO05D008811 6.3e-35 151.0 125 61.6
PGR031G3072 Punica granatum HOM05D007048 ORTHO05D008811 8.3e-35 150.6 125 60.8
Glyma.04G201000 Glycine max HOM05D007048 ORTHO05D008811 1.1e-34 150.2 115 64.3
VMungo1309G1627 Vigna mungo HOM05D007048 ORTHO05D008811 1.8e-34 149.4 113 66.4
Medtr3g098660 Medicago truncatula HOM05D007048 ORTHO05D008811 2.4e-34 149.1 115 65.2
Lsat_1_v5_gn_5_10141 Lactuca sativa HOM05D007048 ORTHO05D008811 4.1e-34 148.3 131 59.5
PGR031G2395 Punica granatum HOM05D007048 ORTHO05D008811 4.1e-34 148.3 125 60.8
Psat5g055240 Pisum sativum HOM05D007048 ORTHO05D008811 5.4e-34 147.9 109 67.9
arahy.Tifrunner.gnm1.ann1.8FCI62 Arachis hypogaea HOM05D007048 ORTHO05D008811 7.0e-34 147.5 113 65.5
FvH4_5g09450 Fragaria vesca HOM05D007048 ORTHO05D008811 7.0e-34 147.5 96 77.1
Lj1g0016164 Lotus japonicus HOM05D007048 ORTHO05D008811 1.2e-33 146.7 115 64.3
unitig_747.g21321 Utricularia gibba HOM05D007048 ORTHO05D008811 2.7e-33 145.6 155 51.0
TPR.G21584 Trifolium pratense HOM05D007048 ORTHO05D008811 3.5e-33 145.2 115 66.1
Eucgr.K02194 Eucalyptus grandis HOM05D007048 ORTHO05D008811 5.9e-33 144.4 145 55.2
CSS0012628 Camellia sinensis var. sinensis HOM05D007048 ORTHO05D008811 2.3e-32 142.5 127 62.2
arahy.Tifrunner.gnm1.ann1.CS080T Arachis hypogaea HOM05D007048 ORTHO05D008811 3.8e-32 141.7 116 63.8
Glyma.06G164400 Glycine max HOM05D007048 ORTHO05D008811 3.8e-32 141.7 115 61.7
arahy.Tifrunner.gnm1.ann1.DD5QTF Arachis hypogaea HOM05D007048 ORTHO05D008811 2.1e-30 136.0 116 60.3
Os04g0397700 Oryza sativa ssp. japonica HOM05D007048 ORTHO05D008811 2.8e-30 135.6 120 57.5
PGR044G0448 Punica granatum HOM05D007048 ORTHO05D008811 1.0e-29 133.7 121 60.3
Hma1.2p1_0664F.1_g198980 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.0e-28 129.4 81 75.3
Hma1.2p1_0664F.1_g198990 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.0e-28 129.4 81 75.3
AUR62009534 Chenopodium quinoa HOM05D007048 ORTHO05D008811 3.4e-28 128.6 94 67.0
AUR62041697 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.2e-27 125.9 90 68.9
AUR62044083 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.2e-27 125.9 90 68.9
Nn3g16280 Nelumbo nucifera HOM05D007048 ORTHO05D008811 1.4e-26 123.2 78 78.2
FAN13G1437 Fragaria x ananassa HOM05D007048 ORTHO05D008811 5.9e-25 117.9 78 75.6
CDE05G0753 Ceratophyllum demersum HOM05D000512 ORTHO05D000861 1.3e-24 116.7 79 75.9
HPP92_008245 Vanilla planifolia HOM05D007048 ORTHO05D008811 1.7e-24 116.3 131 50.4
SEGI_10153 Sequoiadendron giganteum HOM05D007048 ORTHO05D008811 8.6e-24 114.0 108 53.7
ATR0582G167 Amborella trichopoda HOM05D007048 ORTHO05D008811 4.3e-23 111.7 111 53.2
Nn1g04900 Nelumbo nucifera HOM05D007048 ORTHO05D008811 5.6e-23 111.3 84 65.5
BcaB01g01606 Brassica carinata HOM05D007048 ORTHO05D008811 1.2e-22 110.2 91 63.7
AagrBONN_evm.TU.Sc2ySwM_362.2725 Anthoceros agrestis HOM05D007048 ORTHO05D008811 1.8e-18 96.3 109 45.0
Zm00001eb084850 Zea mays HOM05D007048 ORTHO05D008811 5.9e-17 91.3 68 64.7
BcaB05g23641 Brassica carinata HOM05D007048 ORTHO05D008811 8.6e-16 87.4 77 59.7
Pp3c2_1780 Physcomitrium patens HOM05D007048 ORTHO05D008811 1.5e-15 86.7 100 47.0
Mapoly0109s0028 Marchantia polymorpha HOM05D007048 ORTHO05D008811 2.6e-12 75.9 117 36.8
RcHm_v2.0_Chr5g0067941 Rosa chinensis HOM05D052544 ORTHO05D008811 5.8e-12 74.7 56 71.4
ECA233G3375 Erigeron canadensis HOM05D007048 ORTHO05D008811 5.4e-10 68.2 88 43.2
COL.COLO4_37252 Corchorus olitorius HOM05D007048 ORTHO05D008811 1.6e-09 66.6 76 51.3
Oeu009260.1 Olea europaea HOM05D007048 ORTHO05D008811 3.0e-08 62.4 39 74.4


User provided reference genes

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