Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 3.5e-107 392.1 275 100.0
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 7.5e-86 321.2 283 84.1
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 3.7e-77 292.4 284 85.6
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 1.6e-75 287.0 284 84.5
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 7.3e-73 278.1 297 80.8
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 7.3e-73 278.1 297 80.8
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 1.3e-66 257.3 283 77.7
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 1.9e-65 253.4 283 71.4
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 3.3e-65 252.7 285 77.5
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.3e-64 250.8 283 71.7
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 2.1e-64 250.0 283 76.0
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 3.8e-61 239.2 285 74.7
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 6.4e-61 238.4 285 74.7
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 6.4e-61 238.4 288 72.9
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 3.2e-60 236.1 293 72.4
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 4.2e-60 235.7 283 73.9
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.6e-59 233.8 293 72.4
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 1.6e-59 233.8 284 75.0
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 2.1e-59 233.4 281 74.0
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 3.5e-59 232.6 283 73.5
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 4.6e-59 232.3 282 73.4
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 4.6e-59 232.3 288 73.3
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 6.0e-59 231.9 285 73.7
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 1.0e-58 231.1 283 74.2
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.0e-58 231.1 283 69.6
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 1.7e-58 230.3 281 71.9
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.3e-58 229.9 283 74.6
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 3.9e-58 229.2 283 71.7
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 3.9e-58 229.2 283 72.1
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.1e-57 227.6 284 72.5
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.5e-57 227.3 283 72.8
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.9e-57 226.9 277 70.8
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 1.9e-57 226.9 283 71.4
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.9e-57 226.9 291 67.7
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 2.5e-57 226.5 283 70.3
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 3.3e-57 226.1 281 61.9
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 3.3e-57 226.1 283 72.8
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 4.3e-57 225.7 319 47.3
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.6e-57 225.3 267 59.2
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 9.6e-57 224.6 286 73.1
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.6e-56 223.8 283 72.1
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 2.8e-56 223.0 284 72.2
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 2.8e-56 223.0 284 72.2
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.8e-56 223.0 286 67.1
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 3.6e-56 222.6 280 73.6
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 6.2e-56 221.9 283 72.4
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 8.1e-56 221.5 286 63.3
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 2.4e-55 219.9 283 72.8
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 4.0e-55 219.2 257 75.1
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 9.0e-55 218.0 288 68.1
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 1.2e-54 217.6 285 70.9
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 1.5e-54 217.2 366 44.5
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 2.6e-54 216.5 295 70.8
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 4.5e-54 215.7 292 70.2
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 4.5e-54 215.7 299 66.6
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 4.5e-54 215.7 282 72.0
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 4.5e-54 215.7 278 70.9
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 5.8e-54 215.3 289 71.3
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 7.6e-54 214.9 221 83.3
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 9.9e-54 214.5 279 62.7
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 1.3e-53 214.2 292 68.8
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 2.2e-53 213.4 288 69.4
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 3.8e-53 212.6 294 59.5
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 3.8e-53 212.6 283 70.7
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 6.4e-53 211.8 274 57.7
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 8.4e-53 211.5 283 70.7
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 1.1e-52 211.1 283 70.7
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 1.4e-52 210.7 291 69.4
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.9e-52 210.3 284 70.1
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 3.2e-52 209.5 285 70.5
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 3.2e-52 209.5 221 83.3
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 5.5e-52 208.8 289 69.6
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 9.3e-52 208.0 283 70.0
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 2.7e-51 206.5 281 66.5
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 6.0e-51 205.3 277 67.9
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 5.1e-50 202.2 284 69.7
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 3.3e-49 199.5 210 86.2
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.7e-48 196.1 232 77.6
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 3.7e-48 196.1 196 83.7
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 1.4e-47 194.1 288 57.6
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 3.4e-46 189.5 196 84.7
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 4.5e-46 189.1 273 53.8
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 9.3e-44 181.4 193 74.1
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 9.6e-41 171.4 230 53.9
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.6e-40 170.6 181 80.1
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.2e-38 164.5 272 54.4
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 5.9e-38 162.2 241 57.7
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 1.7e-37 160.6 217 59.9
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 5.5e-36 155.6 212 70.3
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.8e-32 143.3 88 81.8
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 3.1e-31 139.8 88 80.7
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 3.1e-31 139.8 251 43.8
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 4.1e-31 139.4 85 80.0
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 9.0e-31 138.3 85 81.2
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.5e-30 137.5 84 79.8
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 3.4e-30 136.3 85 81.2
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.9e-30 135.6 88 77.3
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.9e-30 135.6 88 77.3
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.2e-27 127.9 213 72.3
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 5.1e-26 122.5 182 61.5
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.5e-25 120.2 132 58.3
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 2.4e-23 113.6 132 55.3
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 1.3e-21 107.8 133 51.9
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 3.6e-19 99.8 69 76.8
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.8e-18 97.4 138 58.7
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 2.3e-18 97.1 187 59.9
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 7.4e-17 92.0 60 80.0
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.5e-12 77.8 45 82.2
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.9e-12 77.4 67 62.7
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 1.1e-09 68.2 185 45.9
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 5.3e-07 59.3 48 64.6


User provided reference genes

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