Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 1.9e-259 898.7 455 100.0
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 1.6e-250 869.0 455 96.9
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 2.6e-240 835.1 455 91.4
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 1.5e-227 792.7 460 86.7
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 7.3e-227 790.4 458 86.9
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 1.4e-225 786.2 456 85.3
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 6.8e-225 783.9 455 85.3
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 5.7e-224 780.8 456 85.3
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 5.7e-224 780.8 456 85.3
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 3.7e-223 778.1 464 85.3
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 1.4e-222 776.2 451 86.3
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 2.4e-222 775.4 455 83.7
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 5.4e-222 774.2 456 84.2
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 7.0e-222 773.9 456 85.3
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.6e-221 772.7 455 84.6
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 1.6e-221 772.7 455 84.4
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 2.7e-221 771.9 456 83.8
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 2.7e-221 771.9 456 83.8
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 4.6e-221 771.2 456 84.9
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 1.3e-220 769.6 458 83.6
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.7e-220 769.2 462 85.1
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.7e-220 769.2 455 84.8
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 2.3e-220 768.8 456 84.6
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 5.0e-220 767.7 456 84.6
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 5.0e-220 767.7 456 84.4
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 6.6e-220 767.3 456 84.6
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 8.6e-220 766.9 456 84.6
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 1.5e-219 766.1 462 84.8
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.5e-219 766.1 462 84.6
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 1.9e-219 765.8 458 83.4
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 3.3e-219 765.0 461 83.5
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 9.5e-219 763.5 462 84.6
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 2.1e-218 762.3 460 83.7
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 2.1e-218 762.3 455 84.0
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.8e-218 761.9 462 84.4
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 2.8e-218 761.9 456 84.0
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 2.8e-218 761.9 456 83.8
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 4.0e-217 758.1 456 83.8
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 5.2e-217 757.7 427 88.5
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 2.0e-216 755.7 456 84.0
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 2.0e-216 755.7 427 88.3
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 5.8e-216 754.2 456 84.4
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 5.8e-216 754.2 453 83.2
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 7.5e-216 753.8 456 83.6
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 7.5e-216 753.8 452 83.6
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 1.3e-215 753.1 464 81.5
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 3.7e-215 751.5 437 86.5
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 3.7e-215 751.5 456 82.7
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 3.7e-215 751.5 506 76.3
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 1.1e-214 750.0 458 81.9
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.9e-214 749.2 456 83.6
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 4.1e-214 748.0 457 81.8
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 2.0e-213 745.7 457 81.8
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 3.5e-213 745.0 462 81.8
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 1.0e-212 743.4 465 81.9
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 1.0e-212 743.4 457 81.0
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 5.0e-212 741.1 457 81.0
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 6.6e-212 740.7 457 81.2
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 8.6e-212 740.3 458 80.3
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 1.5e-211 739.6 456 81.6
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 1.5e-211 739.6 462 80.1
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 2.5e-211 738.8 456 81.6
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 5.6e-211 737.6 461 79.0
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 9.5e-211 736.9 458 79.0
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 1.6e-210 736.1 461 79.8
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.6e-210 736.1 458 79.0
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 2.1e-210 735.7 456 81.1
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 2.1e-210 735.7 459 81.0
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 2.1e-210 735.7 459 81.0
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 2.1e-210 735.7 459 80.4
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 2.8e-210 735.3 429 86.2
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 2.8e-210 735.3 429 86.2
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 1.1e-209 733.4 463 79.0
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 5.2e-209 731.1 464 78.7
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 6.8e-209 730.7 459 80.6
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 6.8e-209 730.7 459 80.6
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 8.9e-209 730.3 460 81.3
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 2.0e-208 729.2 459 80.2
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 2.0e-208 729.2 459 80.2
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 2.2e-207 725.7 453 79.5
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 2.9e-207 725.3 462 79.2
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 3.7e-207 724.9 455 79.6
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 4.9e-207 724.5 483 77.6
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 6.4e-207 724.2 465 78.1
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 6.4e-207 724.2 465 78.5
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 1.4e-206 723.0 463 78.4
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 9.2e-206 720.3 455 82.6
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 1.6e-205 719.5 434 82.5
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 2.7e-205 718.8 463 77.5
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 1.0e-204 716.8 500 74.8
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 1.7e-204 716.1 427 82.2
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 2.3e-204 715.7 465 77.4
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 5.1e-204 714.5 413 84.7
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 1.2e-202 709.9 410 84.6
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 5.2e-201 704.5 465 77.6
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 7.6e-200 700.7 455 76.7
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 2.9e-199 698.7 465 76.6
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 3.6e-194 681.8 531 68.9
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 4.7e-194 681.4 438 79.0
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 6.2e-194 681.0 391 85.4
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 6.9e-193 677.6 480 72.5
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.9e-190 669.5 384 86.2
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.3e-188 663.3 384 85.2
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 3.3e-187 658.7 460 74.6
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 9.6e-187 657.1 461 73.3
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 1.3e-186 656.8 458 73.6
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 3.1e-185 652.1 445 74.2
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 5.3e-185 651.4 397 82.6
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 3.9e-180 635.2 431 75.2
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 9.6e-179 630.6 413 75.3
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 4.8e-178 628.2 457 71.6
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 5.3e-177 624.8 433 72.3
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 2.0e-176 622.9 411 76.2
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 1.3e-175 620.2 419 74.5
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 6.0e-173 611.3 413 74.6
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.8e-172 609.8 408 72.5
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.0e-167 594.0 409 70.9
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 4.6e-165 585.1 490 64.9
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 7.4e-163 577.8 362 81.5
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 3.2e-150 535.8 587 54.0
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 5.7e-147 525.0 330 81.5
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 8.2e-146 521.2 427 60.0
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 4.7e-141 505.4 329 78.1
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 1.7e-130 470.3 410 58.0
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 4.8e-122 442.2 368 61.4
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 1.2e-120 437.6 400 58.2
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.7e-112 409.8 251 82.1
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 1.3e-111 407.5 419 51.6
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 2.1e-109 400.2 276 73.2
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 9.2e-105 384.8 427 51.3
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 2.1e-80 303.9 172 86.6
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.0e-79 301.6 189 81.0
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 1.2e-77 294.7 309 54.0
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 1.1e-76 291.6 411 40.9
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 2.8e-61 240.4 358 41.9
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 4.2e-57 226.5 136 78.7
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.1e-48 197.6 386 35.0
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 3.7e-45 186.8 117 78.6
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 5.7e-30 136.3 152 51.3
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 8.2e-29 132.5 72 86.1
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 5.3e-28 129.8 81 84.0
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 5.3e-28 129.8 69 85.5
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 9.7e-22 109.0 103 62.1
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 4.8e-21 106.7 76 72.4
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 4.8e-21 106.7 67 85.1
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.7e-16 90.1 295 26.8
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 6.8e-15 86.3 59 76.3
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 1.7e-13 81.6 61 72.1
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 2.4e-12 77.8 50 76.0
CDE05G3312 Ceratophyllum demersum HOM05D004870 ORTHO05D130477 3.6e-08 63.9 74 51.4
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 1.4e-07 62.0 46 63.0
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 1.4e-07 62.0 46 63.0
Cpa.g.c30355 Carica papaya HOM05D004870 ORTHO05D006061 8.8e-07 59.3 45 62.2
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 2.0e-06 58.2 203 26.6
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 7.5e-06 56.2 203 26.6


User provided reference genes

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