Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 1.5e-107 392.9 200 100.0
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 6.2e-106 387.5 200 99.0
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 1.5e-91 339.7 220 82.7
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 2.9e-87 325.5 220 78.6
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 9.1e-81 303.9 220 75.0
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 7.2e-70 267.7 221 64.3
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 7.9e-69 264.2 221 63.8
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.8e-68 263.1 221 63.3
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.8e-68 263.1 221 62.9
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 6.7e-68 261.2 223 64.6
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.3e-67 258.8 221 62.9
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 4.5e-56 221.9 221 55.7
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 1.1e-54 217.2 214 56.1
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 1.5e-54 216.9 219 55.7
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 2.7e-53 212.6 218 55.0
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 3.6e-53 212.2 218 55.0
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 8.0e-53 211.1 220 54.1
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 3.0e-52 209.1 217 54.4
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 1.2e-51 207.2 221 53.4
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 1.2e-51 207.2 220 54.1
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 5.7e-51 204.9 212 53.3
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.1e-49 200.7 218 54.6
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 9.1e-49 197.6 219 52.1
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 4.2e-46 188.7 219 50.2
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 7.2e-46 188.0 219 51.6
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.8e-44 183.3 218 51.8
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 4.0e-44 182.2 218 48.2
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 4.0e-44 182.2 218 47.2
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 5.2e-44 181.8 218 47.2
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 2.6e-43 179.5 225 47.1
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.6e-43 179.5 218 46.8
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 4.4e-43 178.7 217 49.3
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 9.8e-43 177.6 216 48.6
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 2.8e-42 176.0 214 49.1
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.7e-42 175.6 216 48.6
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 8.3e-42 174.5 216 50.5
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 5.4e-41 171.8 220 47.3
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 5.4e-41 171.8 220 47.3
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 1.2e-40 170.6 214 49.1
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 3.5e-40 169.1 215 46.5
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 3.5e-40 169.1 210 51.4
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 5.9e-40 168.3 217 48.4
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 1.7e-39 166.8 216 47.2
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 1.7e-39 166.8 218 48.2
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 2.3e-39 166.4 218 50.0
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 5.0e-39 165.2 222 46.4
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 8.6e-39 164.5 216 47.2
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 1.1e-38 164.1 216 47.7
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 3.3e-38 162.5 216 48.1
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.2e-37 160.6 210 49.0
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 2.6e-35 152.9 216 42.6
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 4.4e-35 152.1 215 45.1
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 4.4e-35 152.1 212 46.7
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 5.8e-35 151.8 215 43.7
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.7e-34 150.2 207 43.0
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 2.9e-34 149.4 207 43.0
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.1e-33 147.5 200 47.5
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 1.4e-33 147.1 208 44.7
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 3.2e-33 146.0 190 44.7
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 5.4e-33 145.2 213 44.1
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 7.0e-33 144.8 197 44.7
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 2.7e-32 142.9 212 43.4
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 1.3e-31 140.6 214 43.9
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 3.0e-31 139.4 214 44.4
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 3.0e-31 139.4 214 40.2
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 3.9e-31 139.0 214 42.1
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 6.6e-31 138.3 216 40.7
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 6.6e-31 138.3 212 43.4
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 1.9e-30 136.7 210 41.0
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 2.5e-30 136.3 232 41.4
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 9.5e-30 134.4 217 40.6
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 2.8e-29 132.9 216 40.7
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 3.6e-29 132.5 205 42.9
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 3.6e-29 132.5 209 40.2
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 4.7e-29 132.1 217 39.6
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 4.7e-29 132.1 212 42.5
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 1.1e-28 131.0 216 39.4
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 1.1e-28 131.0 218 41.7
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 1.8e-28 130.2 215 39.5
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 2.3e-28 129.8 213 40.8
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 2.3e-28 129.8 84 85.7
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 6.8e-28 128.3 215 41.4
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 1.5e-27 127.1 200 42.0
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 2.0e-27 126.7 211 39.3
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 2.6e-27 126.3 105 58.1
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 9.8e-27 124.4 216 39.8
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 1.7e-26 123.6 209 37.8
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 4.9e-26 122.1 232 37.5
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 8.3e-26 121.3 217 37.3
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 8.3e-26 121.3 217 37.3
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 8.3e-26 121.3 223 35.9
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.4e-25 119.8 204 39.2
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.0e-23 114.4 194 39.7
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 1.3e-23 114.0 233 35.2
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.9e-23 112.5 216 39.8
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.1e-22 110.9 186 40.9
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 2.5e-22 109.8 199 36.7
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 5.6e-22 108.6 234 34.6
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 9.5e-22 107.8 209 35.9
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 4.0e-20 102.4 204 35.3
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 4.0e-20 102.4 233 32.6
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 4.0e-20 102.4 233 32.6
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 5.2e-20 102.1 197 38.1
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 5.2e-20 102.1 102 51.0
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 8.9e-20 101.3 258 32.9
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 3.4e-19 99.4 212 36.8
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 4.4e-19 99.0 212 35.4
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 4.4e-19 99.0 212 35.4
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.3e-18 97.4 194 36.6
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 1.7e-18 97.1 212 33.5
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 6.4e-18 95.1 229 31.9
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 1.1e-17 94.4 212 32.1
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 1.9e-17 93.6 168 38.7
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 1.2e-16 90.9 180 38.9
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 1.6e-16 90.5 198 33.3
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 1.3e-15 87.4 197 37.6
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 6.6e-15 85.1 194 33.0
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 6.6e-15 85.1 138 43.5
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 2.1e-13 80.1 165 39.4
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 3.4e-11 72.8 193 32.1
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 1.3e-10 70.9 112 39.3
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 1.2e-08 64.3 179 29.6
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 4.6e-08 62.4 55 50.9
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 6.0e-08 62.0 96 34.4
Thecc.08G067700 Theobroma cacao HOM05D001755 ORTHO05D001665 8.7e-07 58.2 63 44.4
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 1.5e-06 57.4 108 42.6
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 5.6e-06 55.5 220 25.5
SGA_v2.0_scaffold94G28577 Striga asiatica HOM05D001755 ORTHO05D001665 9.6e-06 54.7 61 44.3


User provided reference genes

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