Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 3.1e-190 668.3 339 100.0
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 2.9e-180 635.2 339 93.8
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 2.9e-172 608.6 338 89.6
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 7.7e-157 557.4 337 82.2
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.8e-153 546.2 338 80.8
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 4.0e-153 545.0 338 80.5
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.2e-152 543.5 338 80.2
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.2e-152 543.5 338 80.5
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.5e-152 543.1 338 80.5
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.4e-150 536.6 328 81.1
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 4.4e-144 515.0 335 73.4
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 8.3e-143 510.8 333 74.2
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 7.7e-141 504.2 335 74.0
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 5.5e-139 498.0 340 72.9
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 1.0e-137 493.8 331 75.5
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 2.3e-137 492.7 342 73.1
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 4.0e-137 491.9 336 72.6
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.5e-136 490.0 339 73.2
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 2.6e-136 489.2 336 72.0
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 7.5e-136 487.6 334 71.6
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 1.3e-135 486.9 334 71.3
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.1e-134 483.8 336 70.2
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 2.4e-134 482.6 341 71.8
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.1e-134 481.9 336 69.6
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.1e-134 481.9 336 69.6
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 5.4e-134 481.5 337 70.0
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.2e-133 480.3 340 70.3
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.2e-133 480.3 335 71.0
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.0e-133 479.6 336 72.0
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 2.7e-133 479.2 339 69.9
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 5.9e-133 478.0 335 70.4
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.0e-132 477.2 335 70.7
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 1.7e-132 476.5 335 69.9
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.8e-132 475.3 337 69.7
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.8e-132 475.3 333 70.3
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 6.6e-132 474.6 337 69.7
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 3.3e-131 472.2 333 69.4
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.6e-130 469.9 319 72.7
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.6e-130 469.9 338 69.8
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 2.1e-130 469.5 330 69.1
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 3.6e-130 468.8 335 68.4
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 6.1e-130 468.0 330 69.1
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.8e-129 466.5 345 67.8
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.3e-129 466.1 344 66.9
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 2.3e-129 466.1 330 68.8
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 3.0e-129 465.7 337 68.0
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 4.0e-129 465.3 342 67.5
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 6.8e-129 464.5 336 67.6
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 6.8e-129 464.5 334 70.7
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 8.9e-129 464.2 330 69.1
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.2e-128 463.8 336 67.3
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.5e-128 463.4 335 68.4
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 4.4e-128 461.8 330 68.8
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 7.5e-128 461.1 325 68.3
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 4.9e-127 458.4 339 67.8
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 6.4e-127 458.0 336 66.7
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 6.4e-127 458.0 331 67.7
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 1.4e-126 456.8 334 68.6
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 2.4e-126 456.1 337 66.8
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 1.0e-124 450.7 365 62.2
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.0e-124 450.7 336 66.1
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 3.3e-123 445.7 326 67.8
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 4.3e-123 445.3 326 68.1
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 9.5e-123 444.1 326 67.8
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-122 443.7 338 66.6
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 1.6e-122 443.4 336 65.2
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 2.1e-122 443.0 326 67.5
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.8e-122 442.6 319 69.0
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 3.6e-122 442.2 337 65.3
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.4e-121 440.3 336 65.2
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.8e-121 439.9 326 67.8
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 5.2e-121 438.3 319 69.0
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 5.2e-121 438.3 336 65.8
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 8.9e-121 437.6 337 65.0
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 1.5e-120 436.8 336 65.8
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 2.0e-120 436.4 327 67.3
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 3.4e-120 435.6 319 68.0
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 7.5e-120 434.5 329 65.7
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 9.8e-120 434.1 328 65.9
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.7e-119 433.3 342 64.3
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 1.7e-119 433.3 329 66.6
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 2.2e-119 433.0 330 63.6
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 5.4e-118 428.3 339 63.1
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.6e-117 426.8 337 63.5
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 1.6e-117 426.8 319 66.8
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 4.6e-117 425.2 339 63.1
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 4.6e-117 425.2 327 64.8
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.1e-115 420.6 335 63.0
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 2.5e-115 419.5 329 65.3
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 3.3e-115 419.1 330 65.5
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 5.6e-115 418.3 321 63.6
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 3.6e-114 415.6 345 61.2
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 1.8e-113 413.3 327 63.0
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 3.1e-113 412.5 335 64.8
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 1.2e-112 410.6 337 60.8
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.3e-111 407.1 334 61.7
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.7e-111 406.8 329 64.7
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 4.9e-111 405.2 329 63.5
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 5.4e-110 401.7 341 59.5
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 9.2e-110 401.0 319 62.4
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.1e-105 387.5 328 58.2
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.1e-105 387.5 328 58.2
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 7.6e-104 381.3 322 59.0
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 8.4e-103 377.9 261 69.0
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.9e-102 376.7 321 58.9
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 5.4e-102 375.2 286 64.0
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 6.0e-101 371.7 338 58.0
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 7.8e-101 371.3 323 58.2
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 6.6e-100 368.2 318 57.2
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 3.8e-87 325.9 252 63.9
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.3e-82 310.8 331 52.6
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.8e-80 302.0 322 45.0
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 2.1e-77 293.5 343 42.3
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 7.9e-69 265.0 353 40.5
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 2.9e-63 246.5 187 65.8
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 2.9e-63 246.5 226 55.3
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 5.0e-63 245.7 187 65.8
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 3.9e-60 236.1 179 64.2
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 2.5e-59 233.4 251 51.4
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.0e-55 221.5 319 39.8
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 9.4e-54 214.9 145 69.0
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 1.3e-50 204.5 135 77.0
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 2.8e-50 203.4 161 64.6
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.4e-41 174.5 138 62.3
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.8e-41 174.1 290 34.8
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.3e-39 167.9 126 69.8
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.5e-38 163.7 100 80.0
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 4.2e-38 162.9 109 70.6
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 8.0e-37 158.7 107 70.1
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 8.0e-37 158.7 116 70.7
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 5.2e-36 156.0 152 57.9
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.5e-35 154.5 126 64.3
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 3.3e-35 153.3 119 61.3
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 7.5e-35 152.1 99 75.8
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 4.5e-32 142.9 199 39.2
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.0e-31 141.7 98 65.3
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.3e-31 141.4 284 31.3
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 3.2e-30 136.7 340 28.5
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.5e-27 127.9 171 39.8
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 4.4e-27 126.3 297 33.7
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 4.4e-27 126.3 84 75.0
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 4.4e-27 126.3 84 75.0
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 4.1e-25 119.8 139 51.1
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 2.0e-24 117.5 176 38.1
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.3e-23 114.8 136 47.8
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.7e-23 114.4 135 52.6
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 3.3e-22 110.2 152 32.9
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 5.7e-19 99.4 113 46.9
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 3.7e-18 96.7 97 53.6
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 3.3e-14 83.6 78 59.0
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 6.1e-13 79.3 56 67.9
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.5e-11 74.7 128 44.5
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.3e-10 71.6 46 73.9
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 1.3e-07 61.6 127 43.3
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 1.5e-06 58.2 40 62.5
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.3e-06 57.0 36 77.8
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 4.3e-06 56.6 273 23.1
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 5.6e-06 56.2 148 34.5


User provided reference genes

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