Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1258600 Malus domestica HOM05D000604 ORTHO05D004856 5.1e-134 481.1 247 100.0
MD10G1238300 Malus domestica HOM05D000604 ORTHO05D004856 1.4e-118 429.9 249 90.4
Prupe.4G106000 Prunus persica HOM05D000604 ORTHO05D004856 5.5e-112 407.9 249 84.7
Cpa.g.sc192.5 Carica papaya HOM05D000604 ORTHO05D004856 8.2e-100 367.5 249 73.5
Cfa008710 Carpinus fangiana HOM05D000604 ORTHO05D004856 2.6e-98 362.5 249 73.1
Manes.13G073400 Manihot esculenta HOM05D000604 ORTHO05D004856 2.6e-98 362.5 249 73.1
Dinv05871 Davidia involucrata HOM05D000604 ORTHO05D004856 3.5e-98 362.1 249 73.5
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 3.5e-98 362.1 249 72.3
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 1.0e-97 360.5 249 71.9
Gohir.D10G047700 Gossypium hirsutum HOM05D000604 ORTHO05D004856 8.5e-97 357.5 249 71.1
Gorai.011G050800 Gossypium raimondii HOM05D000604 ORTHO05D004856 8.5e-97 357.5 249 71.1
Gohir.A10G046400 Gossypium hirsutum HOM05D000604 ORTHO05D004856 1.5e-96 356.7 249 71.1
TAR626G0202 Trochodendron aralioides HOM05D000604 ORTHO05D004856 9.4e-96 354.0 249 70.3
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 1.2e-95 353.6 249 69.9
Ciclev10017571m.g Citrus clementina HOM05D000604 ORTHO05D004856 2.7e-95 352.4 249 71.9
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 2.7e-95 352.4 249 70.3
CiPaw.04G077700 Carya illinoinensis HOM05D000604 ORTHO05D004856 1.4e-94 350.1 249 71.5
Potri.003G149600 Populus trichocarpa HOM05D000604 ORTHO05D004856 1.4e-94 350.1 249 70.3
Glyma.14G154500 Glycine max HOM05D000604 ORTHO05D004856 8.8e-94 347.4 249 71.5
PGSC0003DMG400007320 Solanum tuberosum HOM05D000604 ORTHO05D004856 8.8e-94 347.4 249 71.1
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 1.5e-93 346.7 249 69.9
TWI73G0328 Tripterygium wilfordii HOM05D000604 ORTHO05D004856 2.0e-93 346.3 249 71.5
Lj2A328T81 Lonicera japonica HOM05D000604 ORTHO05D004856 2.6e-93 345.9 249 68.7
CANSAT35G1381 Cannabis sativa HOM05D000604 ORTHO05D004856 7.5e-93 344.4 253 68.8
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 9.8e-93 344.0 253 68.8
MBI18_g32818_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004856 1.3e-92 343.6 249 69.1
PSO724G1052 Papaver somniferum HOM05D000604 ORTHO05D004856 2.8e-92 342.4 249 69.1
Solyc02g081940.3 Solanum lycopersicum HOM05D000604 ORTHO05D004856 2.8e-92 342.4 249 69.9
Nn1g08459 Nelumbo nucifera HOM05D000604 ORTHO05D004856 3.7e-92 342.0 250 70.0
PSO017G6514 Papaver somniferum HOM05D000604 ORTHO05D004856 3.7e-92 342.0 249 69.5
Ca_08573_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004856 4.8e-92 341.7 249 70.7
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 4.8e-92 341.7 249 70.3
Sabra03G0108600 Salix brachista HOM05D000604 ORTHO05D004856 4.8e-92 341.7 249 69.1
arahy.Tifrunner.gnm1.ann1.GY8SZ4 Arachis hypogaea HOM05D000604 ORTHO05D004856 8.3e-92 340.9 249 70.7
Sopen02g026570 Solanum pennellii HOM05D000604 ORTHO05D004856 8.3e-92 340.9 249 69.9
Hma1.2p1_0589F.1_g184700 Hydrangea macrophylla HOM05D000604 ORTHO05D004856 1.1e-91 340.5 248 69.8
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 1.4e-91 340.1 249 70.7
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 1.8e-91 339.7 249 69.9
arahy.Tifrunner.gnm1.ann1.2H30NS Arachis hypogaea HOM05D000604 ORTHO05D004856 2.4e-91 339.3 249 70.7
PSO135G0531 Papaver somniferum HOM05D000604 ORTHO05D004856 2.4e-91 339.3 249 69.1
PSO063G6978 Papaver somniferum HOM05D000604 ORTHO05D004856 3.1e-91 339.0 249 70.3
vmacro11016 Vaccinium macrocarpon HOM05D000604 ORTHO05D004856 3.1e-91 339.0 250 69.2
Lj1g0003644 Lotus japonicus HOM05D001476 ORTHO05D004856 4.1e-91 338.6 249 68.3
VMungo0647G0785 Vigna mungo HOM05D000604 ORTHO05D004856 7.0e-91 337.8 249 69.5
Phvul.001G070900 Phaseolus vulgaris HOM05D000604 ORTHO05D004856 9.1e-91 337.4 249 69.5
SalBow8G1358 Salvia bowleyana HOM05D000604 ORTHO05D004856 2.0e-90 336.3 249 68.3
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 1.0e-89 334.0 249 68.7
TPR.G6171 Trifolium pratense HOM05D000604 ORTHO05D004856 1.0e-89 334.0 249 68.7
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 1.7e-89 333.2 249 67.9
ClCG07G014770 Citrullus lanatus HOM05D000604 ORTHO05D004856 2.9e-89 332.4 249 67.5
Haze_11719 Corylus avellana HOM05D000604 ORTHO05D004856 2.9e-89 332.4 257 66.9
Eucgr.K02063 Eucalyptus grandis HOM05D000604 ORTHO05D004856 2.9e-89 332.4 249 66.7
Glyma.13G032300 Glycine max HOM05D000604 ORTHO05D004856 1.1e-88 330.5 249 68.7
CSS0014014 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004856 1.5e-88 330.1 249 67.1
DCAR_007039 Daucus carota HOM05D000604 ORTHO05D004856 2.5e-88 329.3 249 66.3
Aqoxy5G00580 Aquilegia oxysepala HOM05D000604 ORTHO05D004856 7.2e-88 327.8 249 65.9
MSTRG.7607 Avicennia marina HOM05D000604 ORTHO05D004856 2.7e-87 325.9 249 67.1
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 2.7e-87 325.9 249 65.5
Migut.B01297 Erythranthe guttata HOM05D000604 ORTHO05D004856 3.6e-87 325.5 249 65.5
QL06p028587 Quercus lobata HOM05D000604 ORTHO05D004856 1.0e-86 323.9 310 57.4
AUR62039584 Chenopodium quinoa HOM05D000604 ORTHO05D004856 1.4e-86 323.6 249 64.7
Lj1g0003482 Lotus japonicus HOM05D000604 ORTHO05D004856 1.8e-86 323.2 249 67.1
Atru.BG.155.p Acer truncatum HOM05D000604 ORTHO05D004856 4.0e-86 322.0 249 67.1
Migut.O00375 Erythranthe guttata HOM05D000604 ORTHO05D004856 4.0e-86 322.0 249 65.1
RcHm_v2.0_Chr5g0019271 Rosa chinensis HOM05D000604 ORTHO05D004856 2.8e-84 315.8 247 67.6
AUR62019648 Chenopodium quinoa HOM05D000604 ORTHO05D004856 8.3e-84 314.3 249 62.7
PGR119G0174 Punica granatum HOM05D000604 ORTHO05D004856 4.1e-83 312.0 249 63.1
HanXRQChr04g0119081 Helianthus annuus HOM05D000604 ORTHO05D004856 5.4e-83 311.6 249 63.9
Sc24g0002870 Simmondsia chinensis HOM05D000604 ORTHO05D004856 1.2e-82 310.5 249 58.6
ECA236G3264 Erigeron canadensis HOM05D000604 ORTHO05D004856 1.6e-82 310.1 249 63.9
Migut.M00477 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.6e-82 310.1 248 64.1
FAN21G2591 Fragaria x ananassa HOM05D000604 ORTHO05D004856 3.5e-82 308.9 249 66.3
FAN16G0408 Fragaria x ananassa HOM05D000604 ORTHO05D004856 7.7e-82 307.8 249 66.3
THA.LOC104806210 Tarenaya hassleriana HOM05D000604 ORTHO05D004856 1.3e-81 307.0 249 61.8
Migut.M00474 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.7e-81 306.6 281 58.0
FvH4_3g11840 Fragaria vesca HOM05D000604 ORTHO05D004856 1.7e-81 306.6 249 65.9
FAN25G0854 Fragaria x ananassa HOM05D000604 ORTHO05D004856 5.0e-81 305.1 249 65.5
Lsat_1_v5_gn_7_29360 Lactuca sativa HOM05D000604 ORTHO05D004856 5.0e-81 305.1 249 64.7
Rhsim02G0169700 Rhododendron simsii HOM05D000604 ORTHO05D004856 5.0e-81 305.1 285 57.2
Nitab4.5_0000632g0160 Nicotiana tabacum HOM05D000604 ORTHO05D004856 8.6e-81 304.3 242 65.7
Aa31LG6G2170 Aethionema arabicum HOM05D000604 ORTHO05D004856 3.3e-80 302.4 257 60.7
Medtr7g096260 Medicago truncatula HOM05D000604 ORTHO05D004856 3.3e-80 302.4 249 61.8
Medtr7g094660 Medicago truncatula HOM05D000604 ORTHO05D004856 1.2e-79 300.4 249 61.4
unitig_37.g13055 Utricularia gibba HOM05D000604 ORTHO05D004856 2.1e-79 299.7 249 61.4
Actinidia13225 Actinidia chinensis HOM05D000604 ORTHO05D004856 3.4e-77 292.4 249 61.4
Medtr7g094670 Medicago truncatula HOM05D001476 ORTHO05D002681 3.4e-77 292.4 250 60.8
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 2.2e-76 289.7 250 59.2
Carub.0007s2157 Capsella rubella HOM05D000604 ORTHO05D004856 8.3e-76 287.7 243 63.4
Thhalv10024436m.g Eutrema salsugineum HOM05D000604 ORTHO05D004856 7.0e-75 284.6 251 59.0
AL7G34450 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 4.6e-74 282.0 251 59.4
Sp7g18180 Schrenkiella parvula HOM05D000604 ORTHO05D004856 4.6e-74 282.0 251 58.6
Os04g0611500 Oryza sativa ssp. japonica HOM05D000604 ORTHO05D004856 3.9e-73 278.9 250 60.4
Migut.M00563 Erythranthe guttata HOM05D000604 ORTHO05D004856 6.6e-73 278.1 241 60.6
BcaNung01771 Brassica carinata HOM05D000604 ORTHO05D004856 2.5e-72 276.2 243 59.7
AT4G19610 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 3.3e-72 275.8 251 58.2
BraA01t01094Z Brassica rapa HOM05D000604 ORTHO05D004856 4.3e-72 275.4 243 59.7
A01p11470 Brassica napus HOM05D000604 ORTHO05D004856 7.3e-72 274.6 243 59.7
BcaC09g51398 Brassica carinata HOM05D000604 ORTHO05D004856 9.5e-72 274.2 243 59.3
C01p13560 Brassica napus HOM05D000604 ORTHO05D004856 9.5e-72 274.2 243 59.3
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 2.8e-71 272.7 251 58.6
Zm00001eb430700 Zea mays HOM05D000604 ORTHO05D004856 1.4e-70 270.4 249 57.8
Zm00001eb442350 Zea mays HOM05D000604 ORTHO05D004856 1.4e-70 270.4 249 57.8
BolC1t01328H Brassica oleracea HOM05D000604 ORTHO05D004856 1.8e-70 270.0 256 56.6
SHI01960 Sapria himalayana HOM05D000604 ORTHO05D004856 1.2e-69 267.3 249 56.2
Oeu014816.1 Olea europaea HOM05D000604 ORTHO05D004856 1.9e-67 260.0 242 59.5
CARHR207550 Cardamine hirsuta HOM05D000604 ORTHO05D004856 7.0e-67 258.1 249 53.8
AL6G21620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 3.5e-66 255.8 251 54.6
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 7.8e-66 254.6 253 55.7
Psat2g006120 Pisum sativum HOM05D000604 ORTHO05D004856 3.9e-65 252.3 249 55.8
Ah.10g032170 Amaranthus hybridus HOM05D000604 ORTHO05D004856 1.1e-64 250.8 245 52.2
AT5G08695 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 1.2e-63 247.3 253 53.8
CDE05G3452 Ceratophyllum demersum HOM05D000604 ORTHO05D004856 1.2e-63 247.3 192 64.1
Pp3c7_9260 Physcomitrium patens HOM05D000604 ORTHO05D004856 9.8e-61 237.7 252 52.0
AagrBONN_evm.TU.Sc2ySwM_117.1847 Anthoceros agrestis HOM05D000604 ORTHO05D004856 5.1e-57 225.3 250 53.2
AUR62026050 Chenopodium quinoa HOM05D000604 ORTHO05D004856 9.5e-56 221.1 290 45.5
AUR62006166 Chenopodium quinoa HOM05D000604 ORTHO05D004856 8.1e-55 218.0 293 44.7
Mapoly0030s0107 Marchantia polymorpha HOM05D000604 ORTHO05D004856 3.1e-54 216.1 253 49.0
SMO301G0078 Selaginella moellendorffii HOM05D000604 ORTHO05D004856 3.7e-52 209.1 247 48.6
EL10Ac2g02981 Beta vulgaris HOM05D000604 ORTHO05D004856 1.1e-48 197.6 124 73.4
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.8e-46 190.3 263 46.0
Ah.04g154070 Amaranthus hybridus HOM05D000604 ORTHO05D004856 3.6e-39 166.0 109 70.6
Ah.04g154050 Amaranthus hybridus HOM05D000604 ORTHO05D004856 3.1e-38 162.9 109 69.7
Migut.M00572 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.5e-37 160.6 141 58.2
TAR371G0160 Trochodendron aralioides HOM05D000604 ORTHO05D004856 3.4e-37 159.5 242 42.1
Ah.04g154060 Amaranthus hybridus HOM05D000604 ORTHO05D004856 4.4e-37 159.1 141 57.4
MCO07G708 Micromonas commoda HOM05D000604 ORTHO05D004856 1.6e-34 150.6 272 37.5
Cre16.g685200 Chlamydomonas reinhardtii HOM05D000604 ORTHO05D004856 5.1e-33 145.6 288 37.8
EL10Ac6g13453 Beta vulgaris HOM05D000604 ORTHO05D004856 8.7e-33 144.8 99 68.7
CARHR204590 Cardamine hirsuta HOM05D000604 ORTHO05D004856 8.1e-31 138.3 139 51.8
Glyma.09G265100 Glycine max HOM05D000604 ORTHO05D004856 2.2e-28 130.2 179 46.4
PRCOL_00005574 Prasinoderma coloniale HOM05D000604 ORTHO05D004856 2.7e-26 123.2 286 32.9
Carub.0006s0461 Capsella rubella HOM05D000604 ORTHO05D004856 3.5e-26 122.9 136 52.2
Medtr2g018390 Medicago truncatula HOM05D000604 ORTHO05D004856 4.3e-24 115.9 153 46.4
Glyma.18G225850 Glycine max HOM05D000604 ORTHO05D004856 1.6e-23 114.0 129 50.4
Cfa023163 Carpinus fangiana HOM05D000604 ORTHO05D004856 1.5e-21 107.5 251 32.7
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 2.9e-20 103.2 167 39.5
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 4.9e-20 102.4 229 32.8
Hund20696 Selenicereus undatus HOM05D000604 ORTHO05D004856 7.9e-18 95.1 61 75.4
BolC9t56780H Brassica oleracea HOM05D000604 ORTHO05D004856 3.0e-17 93.2 100 50.0
Migut.O00466 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.6e-15 87.4 136 39.7
MD00G1114700 Malus domestica HOM05D000604 ORTHO05D004856 4.5e-13 79.3 49 81.6
MSTRG.7589 Avicennia marina HOM05D000604 ORTHO05D004856 7.2e-11 72.0 42 88.1
BcaC04g20803 Brassica carinata HOM05D000604 ORTHO05D004856 2.1e-10 70.5 63 58.7
Migut.M00571 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.3e-09 67.0 42 81.0
Migut.B01301 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.3e-07 61.2 39 66.7
SMO164G0237 Selaginella moellendorffii HOM05D033022 ORTHO05D375963 4.8e-07 59.3 160 30.0
AT5G05720 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 9.0e-06 55.1 116 38.8


User provided reference genes

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