Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1244700 Malus domestica HOM05D005861 ORTHO05D007151 5.9e-42 173.7 84 100.0
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 1.1e-14 83.2 78 57.7
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 7.6e-13 77.0 34 97.1
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 7.6e-13 77.0 34 97.1
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 7.6e-13 77.0 34 97.1
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 7.6e-13 77.0 34 97.1
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 7.6e-13 77.0 34 97.1
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 7.6e-13 77.0 34 97.1
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 7.6e-13 77.0 34 97.1
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 7.6e-13 77.0 34 97.1
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 7.6e-13 77.0 34 97.1
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 9.9e-13 76.6 34 97.1
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 1.3e-12 76.3 68 61.8
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 1.3e-12 76.3 64 64.1
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 1.7e-12 75.9 34 94.1
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 1.7e-12 75.9 34 94.1
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.7e-12 75.9 34 94.1
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.7e-12 75.9 34 94.1
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 1.7e-12 75.9 65 61.5
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 1.7e-12 75.9 34 94.1
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 2.2e-12 75.5 40 82.5
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 2.2e-12 75.5 34 94.1
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 2.2e-12 75.5 34 94.1
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 2.2e-12 75.5 34 94.1
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 2.2e-12 75.5 34 94.1
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.2e-12 75.5 34 94.1
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 2.2e-12 75.5 37 86.5
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 2.2e-12 75.5 78 53.8
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 2.2e-12 75.5 34 94.1
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 2.2e-12 75.5 34 94.1
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 2.9e-12 75.1 34 94.1
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 2.9e-12 75.1 34 94.1
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 2.9e-12 75.1 34 94.1
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 3.8e-12 74.7 34 94.1
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 3.8e-12 74.7 34 91.2
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 3.8e-12 74.7 34 94.1
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 3.8e-12 74.7 43 76.7
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 3.8e-12 74.7 34 94.1
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 3.8e-12 74.7 63 63.5
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 4.9e-12 74.3 34 91.2
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 4.9e-12 74.3 74 56.8
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 4.9e-12 74.3 34 94.1
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 4.9e-12 74.3 34 91.2
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 4.9e-12 74.3 34 91.2
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 4.9e-12 74.3 34 91.2
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 4.9e-12 74.3 34 94.1
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 6.4e-12 73.9 34 91.2
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 6.4e-12 73.9 34 91.2
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 6.4e-12 73.9 70 57.1
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 6.4e-12 73.9 34 91.2
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 6.4e-12 73.9 34 91.2
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 1.1e-11 73.2 34 94.1
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 1.1e-11 73.2 34 91.2
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 1.1e-11 73.2 34 91.2
A03p17610 Brassica napus HOM05D005861 ORTHO05D007151 1.1e-11 73.2 34 91.2
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 1.1e-11 73.2 34 91.2
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 1.1e-11 73.2 34 91.2
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 1.1e-11 73.2 34 91.2
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 1.1e-11 73.2 34 91.2
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 1.1e-11 73.2 34 91.2
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 1.9e-11 72.4 34 88.2
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 1.9e-11 72.4 34 88.2
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.9e-11 72.4 34 88.2
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.9e-11 72.4 34 88.2
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 1.9e-11 72.4 34 91.2
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 1.9e-11 72.4 34 91.2
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 2.4e-11 72.0 34 88.2
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 2.4e-11 72.0 34 91.2
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 3.2e-11 71.6 34 88.2
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 4.1e-11 71.2 34 85.3
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 5.4e-11 70.9 34 85.3
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 5.4e-11 70.9 34 85.3
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 7.1e-11 70.5 41 80.5
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 7.1e-11 70.5 37 81.1
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 7.1e-11 70.5 63 57.1
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 9.2e-11 70.1 34 88.2
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 1.2e-10 69.7 65 56.9
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 1.2e-10 69.7 34 82.4
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 1.2e-10 69.7 34 85.3
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 1.6e-10 69.3 34 85.3
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 3.5e-10 68.2 79 46.8
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 3.5e-10 68.2 34 88.2
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 3.5e-10 68.2 34 82.4
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 4.6e-10 67.8 34 82.4
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 4.6e-10 67.8 41 70.7
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 6.0e-10 67.4 34 82.4
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 6.0e-10 67.4 34 82.4
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 6.0e-10 67.4 34 82.4
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 6.0e-10 67.4 34 82.4
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 6.0e-10 67.4 34 82.4
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.3e-09 66.2 41 73.2
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 1.3e-09 66.2 34 79.4
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 1.7e-09 65.9 31 87.1
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 1.7e-09 65.9 31 87.1
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 3.0e-09 65.1 34 76.5
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 3.9e-09 64.7 34 76.5
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 5.1e-09 64.3 34 76.5
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 6.6e-09 63.9 34 76.5
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 6.6e-09 63.9 34 76.5
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 6.6e-09 63.9 34 76.5
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 1.5e-08 62.8 34 79.4
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 3.3e-08 61.6 34 73.5
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 1.4e-06 56.2 45 51.1
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 2.4e-06 55.5 34 64.7


User provided reference genes

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