Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 1.5e-58 229.9 175 100.0
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 2.0e-47 193.0 174 74.7
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.0e-36 156.4 169 80.5
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.5e-23 113.6 146 71.2
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.6e-23 112.8 145 70.3
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 4.4e-23 112.1 146 70.5
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 5.8e-23 111.7 145 71.0
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.3e-22 110.5 147 70.7
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 4.9e-22 108.6 145 68.3
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 5.1e-19 98.6 65 80.0
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.5e-18 97.1 65 78.5
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.5e-18 97.1 65 78.5
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 3.3e-18 95.9 66 78.8
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 3.3e-18 95.9 66 75.8
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 5.6e-18 95.1 66 77.3
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 7.3e-18 94.7 60 80.0
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 7.3e-18 94.7 66 75.8
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 7.3e-18 94.7 66 75.8
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 7.3e-18 94.7 66 77.3
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 7.3e-18 94.7 66 80.3
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 1.2e-17 94.0 63 81.0
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.6e-17 93.6 68 72.1
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 1.6e-17 93.6 65 76.9
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 2.8e-17 92.8 65 75.4
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 3.6e-17 92.4 65 75.4
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 4.7e-17 92.0 66 72.7
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 4.7e-17 92.0 66 71.2
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 6.2e-17 91.7 66 74.2
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 6.2e-17 91.7 56 82.1
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 8.1e-17 91.3 65 78.5
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 8.1e-17 91.3 66 71.2
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 8.1e-17 91.3 65 73.8
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 8.1e-17 91.3 64 79.7
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 8.1e-17 91.3 65 76.9
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.1e-16 90.9 65 73.8
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 1.4e-16 90.5 66 71.2
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 1.4e-16 90.5 66 71.2
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 1.4e-16 90.5 65 75.4
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.4e-16 90.5 65 73.8
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 1.4e-16 90.5 56 82.1
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.8e-16 90.1 56 80.4
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.8e-16 90.1 56 80.4
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 1.8e-16 90.1 56 80.4
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 1.8e-16 90.1 66 69.7
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 1.8e-16 90.1 65 73.8
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 2.3e-16 89.7 65 72.3
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 2.3e-16 89.7 65 73.8
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 3.1e-16 89.4 66 72.7
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 3.1e-16 89.4 65 69.2
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 3.1e-16 89.4 65 69.2
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 3.1e-16 89.4 65 69.2
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 3.1e-16 89.4 66 72.7
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 4.0e-16 89.0 66 71.2
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 4.0e-16 89.0 66 68.2
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 4.0e-16 89.0 66 72.7
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 5.2e-16 88.6 66 68.2
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 6.8e-16 88.2 65 72.3
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 6.8e-16 88.2 65 73.8
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 6.8e-16 88.2 65 73.8
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 6.8e-16 88.2 60 75.0
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 8.9e-16 87.8 64 75.0
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 8.9e-16 87.8 66 68.2
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 8.9e-16 87.8 59 81.4
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 1.2e-15 87.4 66 69.7
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 2.0e-15 86.7 65 67.7
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 2.0e-15 86.7 65 67.7
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 2.0e-15 86.7 65 67.7
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 2.0e-15 86.7 65 67.7
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 2.0e-15 86.7 65 67.7
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 2.0e-15 86.7 66 71.2
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 2.6e-15 86.3 66 69.7
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 2.6e-15 86.3 65 67.7
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 2.6e-15 86.3 65 70.8
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 2.6e-15 86.3 66 69.7
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 3.4e-15 85.9 64 73.4
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 3.4e-15 85.9 65 67.7
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.4e-15 85.5 66 68.2
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 4.4e-15 85.5 66 66.7
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 5.8e-15 85.1 65 70.8
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 5.8e-15 85.1 66 71.2
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 5.8e-15 85.1 65 69.2
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 7.6e-15 84.7 66 66.7
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.3e-14 84.0 66 68.2
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 2.2e-14 83.2 65 67.7
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 2.9e-14 82.8 65 69.2
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 2.9e-14 82.8 66 66.7
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 8.4e-14 81.3 64 67.2
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 8.4e-14 81.3 65 67.7
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 8.4e-14 81.3 66 68.2
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.4e-13 80.5 56 71.4
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.4e-13 80.5 58 69.0
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.9e-13 80.1 65 67.7
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.3e-11 73.9 58 69.0
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 1.3e-11 73.9 64 62.5
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 2.3e-11 73.2 56 67.9
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 2.3e-11 73.2 65 56.9
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.9e-10 70.1 65 60.0
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 9.6e-10 67.8 43 79.1
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 1.1e-08 64.3 43 79.1
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.1e-08 64.3 43 74.4
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 1.4e-08 63.9 66 57.6
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 1.8e-08 63.5 60 56.7
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 2.4e-08 63.2 53 60.4
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 6.8e-08 61.6 38 76.3
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 6.8e-08 61.6 64 51.6
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.4e-07 59.3 39 71.8
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.3e-06 57.4 38 73.7
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.3e-06 57.4 38 73.7


User provided reference genes

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