Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 0.0e+00 2268.0 1137 100.0
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 0.0e+00 2193.3 1135 96.7
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 0.0e+00 2188.7 1135 96.0
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 0.0e+00 2127.1 1135 93.9
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 2109.3 1164 91.5
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 2070.8 1135 92.1
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 2006.5 1164 87.8
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 0.0e+00 2004.2 1139 87.9
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 2003.4 1138 89.2
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 2001.5 1261 82.6
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 0.0e+00 1980.3 1141 87.0
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 0.0e+00 1978.4 1141 86.9
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 0.0e+00 1976.4 1137 87.6
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 0.0e+00 1964.5 1141 86.2
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 0.0e+00 1961.8 1141 86.2
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 0.0e+00 1957.6 1134 86.3
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 0.0e+00 1956.0 1141 85.9
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 0.0e+00 1955.3 1137 86.2
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 0.0e+00 1946.4 1144 85.1
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 0.0e+00 1945.6 1135 86.7
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 0.0e+00 1941.0 1140 86.2
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1941.0 1142 85.4
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 0.0e+00 1940.6 1115 86.7
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1937.9 1142 85.3
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1935.2 1141 85.1
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 0.0e+00 1932.9 1121 86.4
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1931.4 1141 84.9
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1929.1 1141 85.2
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 0.0e+00 1908.3 1124 85.5
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1906.7 1122 85.4
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 0.0e+00 1906.0 1121 85.8
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 0.0e+00 1900.6 1121 85.0
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1896.3 1121 84.9
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 0.0e+00 1895.2 1121 84.7
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 0.0e+00 1894.4 1121 85.5
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 0.0e+00 1890.9 1143 84.8
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1887.8 1140 83.0
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 0.0e+00 1887.1 1127 84.2
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 0.0e+00 1874.0 1188 80.8
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 0.0e+00 1872.8 1120 84.4
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 0.0e+00 1855.9 1140 83.4
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 0.0e+00 1841.6 1132 82.7
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 0.0e+00 1827.8 1123 83.3
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 0.0e+00 1801.2 1156 78.8
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 0.0e+00 1799.3 1135 80.6
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 1798.9 1139 81.5
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 0.0e+00 1798.5 1141 81.4
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 0.0e+00 1795.8 1121 80.6
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 0.0e+00 1793.1 1067 85.6
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 0.0e+00 1788.1 1123 81.3
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 0.0e+00 1786.2 1123 80.7
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 0.0e+00 1784.2 1121 79.8
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 0.0e+00 1779.6 1264 74.0
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 0.0e+00 1778.8 1124 80.3
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 0.0e+00 1773.8 1137 78.8
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 0.0e+00 1771.1 1140 80.4
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1770.0 1118 80.4
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 0.0e+00 1767.3 1120 80.3
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1758.4 1127 78.8
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 0.0e+00 1751.5 1137 78.1
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1749.2 1118 79.0
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 0.0e+00 1746.9 1141 78.3
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1739.9 1121 79.1
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1738.8 1121 79.4
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 0.0e+00 1736.1 1119 77.6
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 0.0e+00 1733.8 1118 77.7
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 0.0e+00 1731.8 1119 77.4
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 0.0e+00 1729.1 1119 77.3
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1726.5 1068 82.2
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1721.1 1124 77.2
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 0.0e+00 1720.7 1122 77.2
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 0.0e+00 1719.5 1122 77.6
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 0.0e+00 1718.4 1141 76.2
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1718.0 1124 77.1
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1717.2 1124 77.0
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 0.0e+00 1716.8 1129 76.8
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 0.0e+00 1716.4 1119 77.2
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 0.0e+00 1716.4 1129 76.8
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 0.0e+00 1715.7 1119 77.1
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 0.0e+00 1708.3 1125 77.4
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1704.1 1118 77.5
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1701.0 1119 76.7
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 0.0e+00 1690.2 1005 83.7
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 0.0e+00 1681.4 1118 76.4
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1678.7 1114 75.8
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1673.3 1131 75.9
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1672.1 888 95.5
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1669.1 1121 75.8
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 0.0e+00 1654.4 1124 74.5
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1652.5 1116 74.7
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 0.0e+00 1575.5 1221 68.5
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 0.0e+00 1547.3 1236 66.9
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 0.0e+00 1535.0 1119 71.8
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 0.0e+00 1432.9 1126 66.1
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1431.8 893 81.6
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 0.0e+00 1426.4 1894 46.6
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 0.0e+00 1395.6 890 79.2
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 0.0e+00 1390.9 1121 63.5
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 0.0e+00 1383.2 1122 65.0
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 0.0e+00 1324.3 1120 60.2
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 0.0e+00 1323.1 909 74.9
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1302.0 1166 58.1
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 0.0e+00 1298.9 1073 63.7
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1287.7 1181 57.9
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1276.2 1186 57.1
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1276.2 1175 57.3
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1248.8 1135 57.3
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1218.0 1134 56.5
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 2.2e-293 1012.7 737 70.7
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 3.2e-292 1008.8 693 74.0
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 1.2e-262 910.6 591 79.2
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 9.2e-255 884.4 503 89.1
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 9.2e-247 857.8 482 88.8
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 2.5e-244 849.7 567 77.6
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.2e-239 832.8 649 65.6
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 4.5e-233 812.4 1112 44.2
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 2.8e-227 793.1 569 71.7
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 8.4e-224 781.6 588 69.0
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 1.6e-206 724.2 828 52.3
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.8e-195 686.8 382 87.7
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 1.2e-174 618.2 451 71.6
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.3e-159 566.6 431 68.9
Solyc08g016060.1 Solanum lycopersicum HOM05D003504 ORTHO05D004006 5.1e-136 490.0 256 92.6
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.6e-134 485.0 274 89.8
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 1.1e-125 455.7 254 91.3
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 6.0e-121 439.9 239 93.7
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 5.6e-111 406.8 231 89.2
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 4.8e-110 403.7 480 49.8
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 2.0e-108 398.3 231 87.4
CSS0012196 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.0e-107 396.0 207 92.8
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 1.5e-100 372.1 335 59.4
vmacro15991 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 3.7e-94 350.9 324 59.9
Gohir.A12G174201 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.3e-88 331.6 174 91.4
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 8.8e-88 329.7 174 89.1
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 9.7e-87 326.2 380 49.2
Peaxi162Scf00280g00008 Petunia axillaris HOM05D003504 ORTHO05D004006 1.5e-71 275.8 228 66.2
Cpa.g.sc34.43 Carica papaya HOM05D003504 ORTHO05D004006 4.4e-71 274.2 144 89.6
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.0e-67 263.1 202 72.3
Ca_24185_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 1.7e-62 245.7 137 86.9
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 2.9e-46 191.8 131 75.6
Psat0s1032g0040 Pisum sativum HOM05D003504 ORTHO05D004006 1.6e-44 186.0 105 82.9
CDE09G0213 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.9e-42 179.1 91 91.2
AagrBONN_evm.TU.Sc2ySwM_344.764 Anthoceros agrestis HOM05D003504 ORTHO05D004006 2.6e-39 168.7 121 66.1
Zm00001eb113250 Zea mays HOM05D003504 ORTHO05D004006 2.3e-35 155.6 108 70.4
QL04p084884 Quercus lobata HOM05D003504 ORTHO05D004006 1.5e-34 152.9 77 92.2
Cpa.g.sc34.44 Carica papaya HOM05D003504 ORTHO05D004006 5.2e-32 144.4 108 73.1
Zm00001eb145990 Zea mays HOM05D003504 ORTHO05D004006 2.0e-31 142.5 131 58.8
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 5.8e-31 141.0 124 62.1
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 9.8e-31 140.2 182 48.9
Phvul.011G177325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 4.9e-30 137.9 134 59.7
Lsat_1_v5_gn_7_41641 Lactuca sativa HOM05D003504 ORTHO05D004006 7.1e-21 107.5 75 77.3
CBR_g22316 Chara braunii HOM05D003504 ORTHO05D004006 2.3e-19 102.4 142 36.6
SHI02263 Sapria himalayana HOM05D003504 ORTHO05D004006 5.1e-19 101.3 100 55.0
Phvul.011G172400 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 8.6e-19 100.5 49 93.9
QL04p085078 Quercus lobata HOM05D003504 ORTHO05D004006 1.5e-18 99.8 79 65.8
SHI02262 Sapria himalayana HOM05D003504 ORTHO05D004006 3.3e-18 98.6 84 60.7
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 1.4e-16 93.2 76 67.1
Lsat_1_v5_gn_3_41440 Lactuca sativa HOM05D003504 ORTHO05D004006 4.0e-16 91.7 62 79.0
vmacro15990 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 8.9e-16 90.5 49 93.9
Zm00001eb412430 Zea mays HOM05D003504 ORTHO05D004006 1.2e-15 90.1 88 55.7
unitig_0.g393 Utricularia gibba HOM05D003504 ORTHO05D004006 9.9e-15 87.0 61 68.9
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 4.9e-14 84.7 56 75.0
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 6.4e-14 84.3 57 75.4
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 8.4e-14 84.0 80 58.8
Haze_18583 Corylus avellana HOM05D002115 ORTHO05D002263 8.4e-14 84.0 46 84.8
Cpa.g.sc3151.1 Carica papaya HOM05D003504 ORTHO05D004006 1.1e-13 83.6 85 57.6
ClCG03G013860 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.4e-13 83.2 84 52.4
CAN.G83.10 Capsicum annuum HOM05D003504 ORTHO05D004006 4.2e-13 81.6 54 74.1
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 9.3e-13 80.5 77 49.4
SHI02260 Sapria himalayana HOM05D003504 ORTHO05D004006 6.0e-12 77.8 49 67.3
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 6.0e-12 77.8 78 56.4
Lsat_1_v5_gn_1_87860 Lactuca sativa HOM05D002142 ORTHO05D001189 6.6e-11 74.3 72 61.1
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 2.8e-09 68.9 58 62.1
Lsat_1_v5_gn_5_53440 Lactuca sativa HOM05D003504 ORTHO05D004006 1.5e-07 63.2 62 61.3
QL04p085886 Quercus lobata HOM05D003504 ORTHO05D004006 2.6e-07 62.4 57 61.4
SEGI_08102 Sequoiadendron giganteum HOM05D017310 ORTHO05D004006 5.8e-07 61.2 81 42.0
AagrBONN_evm.TU.Sc2ySwM_340.609 Anthoceros agrestis HOM05D003504 ORTHO05D004006 4.9e-06 58.2 80 43.8
SEGI_26038 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 8.4e-06 57.4 49 57.1


User provided reference genes

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