Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1837.4 939 100.0
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1574.3 939 85.6
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1473.0 939 79.3
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1465.7 939 79.3
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1461.8 939 79.0
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1461.4 939 79.0
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1439.9 940 78.3
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1307.4 943 70.9
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1286.6 944 69.3
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1281.9 944 69.1
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1281.5 947 69.7
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1280.8 952 69.7
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1278.5 943 70.0
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1277.3 939 68.9
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1276.5 940 69.3
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1275.0 940 69.1
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1273.1 939 68.3
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1269.2 942 68.2
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1266.9 943 69.8
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1264.6 948 69.0
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1264.2 949 69.2
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1255.0 937 67.9
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1252.7 947 69.2
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1251.5 944 67.8
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1248.4 932 66.6
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1248.0 940 66.9
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1232.2 945 65.8
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1229.9 945 67.2
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1228.8 936 66.5
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1228.4 948 67.2
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1226.8 946 68.2
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1224.9 939 66.5
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1211.1 952 65.3
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1203.0 963 64.2
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1201.4 988 65.3
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1194.9 947 65.0
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1192.6 942 63.4
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1189.9 945 64.2
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1184.9 941 63.8
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1183.3 942 64.0
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1182.5 938 67.8
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1180.2 942 64.0
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1180.2 942 64.0
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1178.7 946 63.8
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1178.3 945 63.6
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1176.8 911 65.0
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1176.4 911 65.2
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1175.6 940 62.9
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1174.5 941 63.2
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1167.9 1000 61.8
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 0.0e+00 1167.9 941 64.1
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1166.0 942 63.2
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1162.1 948 63.0
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1156.4 939 63.3
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1151.3 939 62.9
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1149.4 939 61.7
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1146.3 939 61.8
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1140.6 940 61.8
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1140.2 958 61.4
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 0.0e+00 1139.8 959 61.1
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1139.0 949 61.3
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1131.7 940 60.1
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1130.5 943 61.4
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1129.8 939 61.4
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1129.0 947 60.9
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1128.2 940 61.4
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1123.6 940 60.5
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1122.1 948 61.6
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1120.1 947 60.7
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 0.0e+00 1110.9 857 67.1
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 0.0e+00 1108.6 940 60.9
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 0.0e+00 1095.9 819 68.0
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1095.5 942 59.6
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 0.0e+00 1092.8 942 60.8
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 0.0e+00 1082.0 939 58.7
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 0.0e+00 1075.1 943 58.2
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.6e-311 1072.0 944 58.8
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 5.4e-309 1064.3 885 60.8
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 1.3e-307 1059.7 949 57.4
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 6.8e-304 1047.3 810 65.9
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 2.0e-303 1045.8 947 57.9
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.3e-299 1033.1 758 68.3
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 1.6e-297 1026.2 947 58.0
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 1.4e-296 1023.1 944 57.6
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 6.4e-286 987.6 935 56.7
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 3.4e-279 965.3 739 68.3
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 5.1e-275 951.4 847 58.8
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 4.7e-273 944.9 942 52.1
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 3.9e-259 898.7 684 66.7
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.1e-257 891.0 693 65.7
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 9.4e-237 824.3 940 47.8
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 5.3e-224 781.9 945 45.8
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 3.2e-213 746.1 663 59.6
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 2.5e-205 719.9 943 43.8
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 3.7e-193 679.5 484 68.8
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 1.7e-190 670.6 951 40.2
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 2.1e-180 637.1 914 39.3
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 9.9e-154 548.5 420 65.2
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.3e-153 548.1 471 64.3
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 3.9e-150 536.6 454 64.3
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 9.0e-147 525.4 747 42.0
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 2.4e-144 517.3 873 34.8
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.1e-140 504.2 395 65.1
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 6.0e-135 486.1 933 31.9
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 8.7e-134 482.3 881 35.2
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.0e-130 471.1 421 58.4
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.6e-103 380.6 419 52.5
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.2e-94 350.1 258 68.6
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 9.8e-85 319.3 192 79.7
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.9e-59 235.3 351 43.9
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 9.2e-59 233.0 345 43.8
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 2.1e-47 195.3 461 33.4
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.4e-45 188.0 344 38.1
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.7e-41 175.6 144 63.9
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-39 169.5 134 67.2
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 2.9e-36 158.3 117 71.8
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.1e-30 138.3 120 62.5
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 4.0e-30 137.9 129 56.6
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 9.9e-29 133.3 244 39.3
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 2.4e-27 128.6 150 48.7
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.5e-24 118.6 72 77.8
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 9.6e-24 116.7 72 76.4
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 3.7e-23 114.8 72 75.0
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 4.8e-23 114.4 72 73.6
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 6.2e-23 114.0 72 75.0
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 9.3e-19 100.1 69 72.5
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 6.3e-15 87.4 54 74.1
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 8.2e-15 87.0 132 40.2
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.3e-14 84.3 61 65.6
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-13 83.2 54 72.2
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.0e-13 82.4 54 72.2
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.9e-13 80.9 67 62.7
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 7.6e-13 80.5 61 63.9
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.7e-12 79.3 123 39.0
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.1e-11 76.6 59 72.9
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 7.2e-11 73.9 67 58.2
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 9.3e-11 73.6 46 76.1
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 6.1e-10 70.9 70 48.6
Actinidia04704 Actinidia chinensis HOM05D004953 ORTHO05D006193 9.7e-08 63.5 243 27.2
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.3e-07 63.2 37 78.4
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 1.6e-07 62.8 39 74.4
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 2.2e-07 62.4 422 20.6


User provided reference genes

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