Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 9.6e-107 390.2 199 100.0
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 4.3e-99 364.8 192 98.4
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 4.5e-96 354.8 183 97.8
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 9.3e-86 320.5 167 96.4
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-68 263.8 186 76.9
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 6.9e-65 251.1 183 69.9
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 2.0e-56 223.0 183 63.4
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.9e-54 216.5 182 62.1
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 4.2e-54 215.3 182 62.1
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 5.5e-54 214.9 114 100.0
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 3.3e-51 205.7 189 57.1
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 7.4e-51 204.5 110 99.1
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 1.7e-50 203.4 192 57.3
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 4.1e-49 198.7 189 56.1
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 1.2e-48 197.2 184 57.6
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 1.0e-47 194.1 183 58.5
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 9.4e-46 187.6 187 55.6
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 1.6e-45 186.8 192 52.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.1e-45 186.4 187 52.4
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.1e-45 186.4 187 52.4
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 1.0e-44 184.1 187 55.1
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 1.8e-44 183.3 187 54.5
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 3.0e-44 182.6 182 55.5
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 3.0e-44 182.6 187 55.6
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 3.0e-44 182.6 182 54.9
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 5.2e-44 181.8 192 52.1
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.0e-43 179.9 190 53.2
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 1.7e-42 176.8 182 51.6
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.8e-42 176.0 182 52.2
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 6.3e-42 174.9 187 52.4
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 2.4e-41 172.9 192 52.1
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 2.4e-41 172.9 188 51.1
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 5.3e-41 171.8 181 51.4
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 7.0e-41 171.4 191 50.3
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 9.1e-41 171.0 182 51.6
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 1.6e-40 170.2 175 53.1
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 1.6e-40 170.2 190 51.1
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 5.9e-40 168.3 184 53.3
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 2.2e-39 166.4 192 50.0
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 6.5e-39 164.9 192 49.5
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 8.5e-39 164.5 191 49.2
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 1.5e-38 163.7 187 50.8
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 1.5e-38 163.7 185 52.4
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 1.9e-38 163.3 191 49.2
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 3.2e-38 162.5 191 47.6
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 4.2e-38 162.2 197 48.2
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 4.2e-38 162.2 182 47.8
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 5.5e-38 161.8 187 50.3
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 7.2e-38 161.4 181 51.4
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 9.4e-38 161.0 182 47.3
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.2e-37 160.6 180 48.3
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 1.2e-37 160.6 191 47.6
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 2.1e-37 159.8 185 49.7
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.6e-37 159.1 182 47.8
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 1.0e-36 157.5 184 51.6
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 1.4e-36 157.1 181 49.2
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.4e-36 157.1 183 48.6
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 1.8e-36 156.8 182 46.7
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 2.3e-36 156.4 191 47.1
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 3.0e-36 156.0 184 51.1
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 4.0e-36 155.6 185 46.5
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 8.8e-36 154.5 188 44.7
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 8.8e-36 154.5 182 46.2
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.5e-35 153.7 185 48.1
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 2.0e-35 153.3 182 45.1
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 4.4e-35 152.1 184 51.6
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 5.7e-35 151.8 182 46.7
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 5.7e-35 151.8 190 46.8
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 5.7e-35 151.8 191 45.5
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 2.8e-34 149.4 182 45.6
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.8e-33 146.7 190 44.7
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 2.4e-33 146.4 186 47.8
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 4.1e-33 145.6 182 48.9
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 4.1e-33 145.6 182 48.9
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 4.1e-33 145.6 178 46.6
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 2.2e-31 139.8 189 45.0
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 8.5e-31 137.9 175 46.9
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 1.2e-29 134.0 181 40.9
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 1.2e-29 134.0 189 41.3
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 1.2e-29 134.0 187 40.1
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 3.6e-29 132.5 182 45.1
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.3e-28 129.8 184 41.3
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 6.8e-28 128.3 225 37.8
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 1.5e-27 127.1 182 40.1
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 4.4e-27 125.6 190 40.5
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.7e-26 123.6 193 40.9
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 2.2e-26 123.2 180 41.7
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 2.2e-26 123.2 180 41.7
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 2.8e-26 122.9 182 42.3
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 2.8e-26 122.9 182 42.3
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.8e-26 122.9 185 42.2
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 3.7e-26 122.5 182 42.3
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 6.3e-26 121.7 180 41.7
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 4.1e-25 119.0 183 42.1
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 5.4e-25 118.6 181 40.3
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.8e-24 114.8 182 37.4
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 1.0e-23 114.4 181 40.3
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 1.0e-23 114.4 180 40.0
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 1.7e-23 113.6 129 50.4
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.9e-23 112.8 182 36.8
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 2.9e-23 112.8 182 37.9
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 5.0e-23 112.1 180 38.9
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 8.6e-23 111.3 189 36.0
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.1e-22 110.9 189 35.4
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.9e-22 110.2 178 41.0
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 7.3e-22 108.2 180 38.9
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 2.1e-21 106.7 178 41.0
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 2.1e-21 106.7 178 41.0
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 8.0e-21 104.8 183 39.9
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 3.0e-20 102.8 181 38.7
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.0e-20 102.8 202 35.1
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 9.8e-19 97.8 118 46.6
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 8.3e-18 94.7 179 34.6
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 8.3e-18 94.7 179 34.6
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.0e-15 87.8 100 50.0
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 5.0e-15 85.5 82 50.0
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 4.0e-12 75.9 172 30.8
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.0e-07 61.2 95 37.9


User provided reference genes

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