Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 1.7e-114 416.0 202 100.0
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 2.8e-82 308.9 205 71.7
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 1.4e-81 306.6 191 74.9
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.4e-81 306.6 191 74.9
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 5.4e-81 304.7 191 74.3
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 4.0e-76 288.5 186 76.3
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 4.4e-75 285.0 193 72.0
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 2.0e-72 276.2 193 67.9
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 7.8e-72 274.2 199 67.3
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 1.0e-71 273.9 194 68.0
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 5.0e-71 271.6 161 77.6
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 6.6e-71 271.2 197 67.5
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 6.6e-71 271.2 167 75.4
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 4.3e-70 268.5 191 68.6
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 5.6e-70 268.1 194 69.1
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 2.1e-69 266.2 195 64.1
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 2.8e-69 265.8 192 67.2
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 3.6e-69 265.4 199 65.8
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 8.0e-69 264.2 201 63.2
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 2.3e-68 262.7 194 64.9
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 5.2e-68 261.5 188 67.0
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 1.2e-67 260.4 193 63.2
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 2.6e-67 259.2 160 73.1
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 4.4e-67 258.5 172 69.2
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 7.5e-67 257.7 160 73.1
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 1.3e-66 256.9 161 73.9
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 1.3e-66 256.9 161 73.9
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 1.3e-66 256.9 159 71.7
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.9e-66 255.8 191 65.4
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 2.9e-66 255.8 160 73.8
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 3.7e-66 255.4 181 66.3
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 4.9e-66 255.0 158 72.2
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 4.9e-66 255.0 182 65.9
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 8.3e-66 254.2 193 63.2
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 2.4e-65 252.7 181 66.3
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 3.2e-65 252.3 167 69.5
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 7.0e-65 251.1 194 62.9
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 7.0e-65 251.1 194 62.9
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 1.2e-64 250.4 194 60.3
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 1.2e-64 250.4 159 69.8
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 1.2e-64 250.4 182 64.3
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.0e-64 249.6 191 64.4
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 2.0e-64 249.6 198 62.6
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 4.6e-64 248.4 197 63.5
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 6.0e-64 248.1 166 71.1
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 1.3e-63 246.9 206 62.1
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 1.3e-63 246.9 160 67.5
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 1.7e-63 246.5 168 69.0
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 2.3e-63 246.1 159 68.6
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 3.9e-63 245.4 160 71.9
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 6.6e-63 244.6 158 69.6
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 8.6e-63 244.2 165 70.9
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 1.5e-62 243.4 158 69.0
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 1.5e-62 243.4 195 62.6
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 2.5e-62 242.7 186 65.6
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 3.3e-62 242.3 173 67.1
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 7.3e-62 241.1 161 68.9
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 9.5e-62 240.7 161 69.6
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 9.5e-62 240.7 171 66.1
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 2.1e-61 239.6 175 65.1
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 2.8e-61 239.2 161 68.9
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 6.2e-61 238.0 195 61.5
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 6.2e-61 238.0 171 64.9
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 1.1e-60 237.3 175 63.4
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 1.8e-60 236.5 191 61.3
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 1.8e-60 236.5 161 68.3
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 1.8e-60 236.5 175 65.1
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 4.0e-60 235.3 186 63.4
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 3.4e-59 232.3 164 65.9
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 7.5e-59 231.1 168 64.9
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 2.9e-58 229.2 188 57.4
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 3.7e-58 228.8 176 64.8
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 1.1e-57 227.3 160 65.6
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 2.4e-57 226.1 171 59.6
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 3.5e-56 222.2 162 64.2
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 1.3e-55 220.3 149 69.1
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 1.7e-55 219.9 162 64.2
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 3.9e-55 218.8 197 55.3
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 3.9e-55 218.8 162 63.6
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 3.9e-55 218.8 168 62.5
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 1.5e-54 216.9 170 56.5
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 1.6e-53 213.4 152 64.5
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 2.1e-53 213.0 167 61.7
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 2.8e-53 212.6 167 61.7
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 2.8e-53 212.6 167 61.7
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 2.8e-53 212.6 167 61.7
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 8.1e-53 211.1 155 65.2
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 1.8e-52 209.9 167 60.5
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 5.2e-52 208.4 187 55.1
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 2.4e-49 199.5 155 59.4
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 2.4e-49 199.5 180 55.6
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 1.2e-45 187.2 119 76.5
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 6.2e-45 184.9 158 53.2
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 4.9e-42 175.3 123 67.5
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 1.4e-41 173.7 150 51.3
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 2.3e-39 166.4 134 52.2
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 4.3e-38 162.2 177 43.5
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 4.9e-34 148.7 147 48.3
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 7.1e-33 144.8 177 41.2
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 1.1e-30 137.5 129 53.5
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.3e-28 128.6 80 73.8
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 5.4e-25 118.6 153 35.9
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 5.1e-23 112.1 81 59.3
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 8.1e-21 104.8 156 37.8
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 1.5e-19 100.5 52 78.8
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.0e-15 87.8 54 75.9
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 2.5e-14 83.2 44 86.4
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 1.9e-06 57.0 77 40.3


User provided reference genes

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