Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 5.8e-32 140.2 67 100.0
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 5.1e-20 100.5 60 76.7
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 5.6e-19 97.1 49 87.8
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 4.9e-15 84.0 66 63.6
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.4e-15 83.6 44 81.8
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 8.4e-15 83.2 44 81.8
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 8.4e-15 83.2 44 81.8
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 8.4e-15 83.2 44 88.6
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 8.4e-15 83.2 46 78.3
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 7.1e-14 80.1 44 79.5
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 7.1e-14 80.1 44 79.5
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 9.3e-14 79.7 51 72.5
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 2.1e-13 78.6 42 81.0
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 2.1e-13 78.6 43 79.1
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.7e-13 78.2 51 68.6
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.6e-13 77.4 52 69.2
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 1.0e-12 76.3 48 70.8
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 1.3e-12 75.9 41 80.5
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 1.8e-12 75.5 43 76.7
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 1.8e-12 75.5 43 76.7
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.8e-12 75.5 53 66.0
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 1.8e-12 75.5 53 64.2
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.8e-12 75.5 43 74.4
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.3e-12 75.1 51 70.6
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 3.0e-12 74.7 59 61.0
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 3.0e-12 74.7 39 79.5
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 3.9e-12 74.3 41 80.5
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 3.9e-12 74.3 41 80.5
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 5.1e-12 73.9 63 55.6
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 5.1e-12 73.9 38 81.6
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 6.7e-12 73.6 63 55.6
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 6.7e-12 73.6 43 79.1
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 6.7e-12 73.6 41 73.2
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 6.7e-12 73.6 47 70.2
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 6.7e-12 73.6 42 76.2
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 6.7e-12 73.6 50 66.0
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 8.7e-12 73.2 51 66.7
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 8.7e-12 73.2 46 69.6
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 8.7e-12 73.2 38 84.2
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 8.7e-12 73.2 52 65.4
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 8.7e-12 73.2 52 65.4
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 8.7e-12 73.2 39 79.5
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 1.1e-11 72.8 38 78.9
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 1.1e-11 72.8 40 75.0
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 1.1e-11 72.8 43 72.1
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.1e-11 72.8 43 69.8
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 1.1e-11 72.8 64 56.2
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.1e-11 72.8 48 70.8
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 1.5e-11 72.4 42 69.0
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 1.5e-11 72.4 52 65.4
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.5e-11 72.4 48 68.8
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 1.9e-11 72.0 44 68.2
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 1.9e-11 72.0 60 60.0
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.5e-11 71.6 45 64.4
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 2.5e-11 71.6 40 77.5
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.5e-11 71.6 58 62.1
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 3.3e-11 71.2 46 65.2
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 3.3e-11 71.2 38 76.3
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 4.3e-11 70.9 59 57.6
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 4.3e-11 70.9 42 71.4
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 5.6e-11 70.5 45 66.7
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 5.6e-11 70.5 40 72.5
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 5.6e-11 70.5 41 73.2
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 9.6e-11 69.7 39 74.4
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 9.6e-11 69.7 38 78.9
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 9.6e-11 69.7 47 68.1
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 9.6e-11 69.7 56 55.4
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.3e-10 69.3 47 63.8
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 1.3e-10 69.3 38 76.3
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.6e-10 68.9 41 73.2
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.6e-10 68.9 42 73.8
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.6e-10 68.9 39 71.8
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 2.1e-10 68.6 38 73.7
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 2.1e-10 68.6 65 50.8
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.1e-10 68.6 52 61.5
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 2.1e-10 68.6 45 62.2
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.8e-10 68.2 41 68.3
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 2.8e-10 68.2 38 73.7
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 2.8e-10 68.2 38 73.7
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 2.8e-10 68.2 38 73.7
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.8e-10 68.2 41 70.7
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 2.8e-10 68.2 41 70.7
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.7e-10 67.8 41 68.3
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 4.8e-10 67.4 45 64.4
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 4.8e-10 67.4 38 76.3
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 4.8e-10 67.4 47 63.8
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 6.2e-10 67.0 63 52.4
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 6.2e-10 67.0 44 65.9
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 6.2e-10 67.0 45 66.7
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 8.2e-10 66.6 45 62.2
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 1.1e-09 66.2 38 73.7
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.1e-09 66.2 44 65.9
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.4e-09 65.9 58 56.9
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 1.4e-09 65.9 53 54.7
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 1.4e-09 65.9 54 53.7
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.8e-09 65.5 39 66.7
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.8e-09 65.5 39 66.7
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.8e-09 65.5 54 51.9
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 2.4e-09 65.1 42 66.7
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 2.4e-09 65.1 37 73.0
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.4e-09 65.1 56 58.9
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 3.1e-09 64.7 38 71.1
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 3.1e-09 64.7 58 55.2
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 3.1e-09 64.7 38 68.4
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 4.0e-09 64.3 41 65.9
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 4.0e-09 64.3 52 51.9
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 4.0e-09 64.3 52 51.9
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 4.0e-09 64.3 38 68.4
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 4.0e-09 64.3 38 68.4
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 4.0e-09 64.3 38 68.4
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 5.3e-09 63.9 46 56.5
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 6.9e-09 63.5 36 72.2
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.4e-08 61.2 42 57.1
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.4e-08 61.2 42 57.1
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.4e-08 61.2 42 57.1
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.4e-08 61.2 42 57.1
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.4e-08 61.2 42 57.1
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 4.5e-08 60.8 41 58.5
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 7.6e-08 60.1 36 66.7
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 1.0e-07 59.7 43 55.8
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.0e-07 59.7 32 75.0
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.0e-07 59.7 41 63.4
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.7e-07 58.9 36 61.1
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 1.7e-07 58.9 39 59.0
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 2.2e-07 58.5 36 61.1
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 2.2e-07 58.5 46 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 2.9e-07 58.2 35 71.4
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 2.9e-07 58.2 35 71.4
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 4.9e-07 57.4 39 66.7
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 4.9e-07 57.4 35 68.6
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 4.9e-07 57.4 38 65.8
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 6.5e-07 57.0 38 60.5
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.4e-06 55.8 37 64.9
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 2.5e-06 55.1 34 64.7
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 4.2e-06 54.3 34 67.6
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 4.2e-06 54.3 43 55.8


User provided reference genes

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