Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.3e-154 549.7 284 100.0
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.2e-123 446.8 291 80.1
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.0e-98 364.0 284 64.1
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 5.2e-98 361.7 286 65.7
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 8.9e-98 360.9 284 65.5
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.6e-97 359.4 282 62.4
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 3.4e-97 359.0 253 69.6
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 3.4e-97 359.0 279 64.2
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 7.5e-97 357.8 277 63.2
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.1e-95 354.0 257 67.7
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.4e-95 353.6 283 62.5
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 5.4e-95 351.7 284 64.8
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.6e-94 350.1 279 61.6
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.7e-94 349.4 282 60.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.7e-94 349.4 285 61.8
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 4.6e-94 348.6 275 63.6
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 3.9e-93 345.5 297 59.6
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.9e-93 345.5 273 64.1
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 5.0e-93 345.1 276 63.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.1e-92 344.0 253 66.4
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.5e-92 343.6 275 64.0
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 3.3e-92 342.4 282 60.6
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 4.3e-92 342.0 275 62.9
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 9.5e-92 340.9 271 62.0
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.2e-91 340.5 278 63.7
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.6e-91 340.1 297 57.9
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 8.0e-91 337.8 271 61.6
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 8.0e-91 337.8 298 59.4
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 3.1e-90 335.9 279 61.6
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.5e-89 333.6 283 61.5
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.6e-89 332.8 253 63.6
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 4.4e-89 332.0 275 60.4
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 4.4e-89 332.0 275 61.8
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 9.8e-89 330.9 290 57.6
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 2.2e-88 329.7 293 56.3
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 8.3e-88 327.8 279 59.9
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 2.4e-87 326.2 275 58.9
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 4.1e-87 325.5 283 59.7
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 4.1e-87 325.5 292 57.2
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.1e-87 325.5 284 60.9
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.0e-86 323.2 284 60.6
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.0e-85 320.9 276 60.5
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.3e-85 320.5 261 62.1
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.9e-84 316.6 292 54.8
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.5e-84 316.2 318 54.7
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 9.5e-84 314.3 285 57.5
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.2e-83 313.9 250 60.4
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 3.1e-82 309.3 252 61.9
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 8.9e-82 307.8 250 57.2
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.2e-81 307.4 288 56.6
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 2.6e-81 306.2 272 57.7
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 7.5e-81 304.7 290 54.5
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.7e-80 303.5 282 55.7
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.2e-80 303.1 293 53.2
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 2.2e-80 303.1 265 55.1
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 8.3e-80 301.2 322 49.1
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.9e-79 300.1 295 52.5
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 2.4e-79 299.7 267 60.3
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 7.1e-79 298.1 267 56.6
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.6e-78 297.0 281 53.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.6e-78 297.0 252 57.5
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 2.1e-78 296.6 303 50.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 3.5e-78 295.8 256 60.2
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 6.0e-78 295.0 322 48.4
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.7e-77 293.5 406 42.9
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 3.9e-77 292.4 256 58.6
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 6.6e-77 291.6 277 53.4
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.1e-76 290.8 280 53.2
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 3.3e-76 289.3 279 52.7
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 4.3e-76 288.9 281 51.6
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 5.6e-76 288.5 285 51.9
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 9.5e-76 287.7 277 56.3
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 2.1e-75 286.6 283 52.3
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.1e-75 286.6 283 50.9
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 4.7e-75 285.4 285 51.9
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.4e-74 283.9 270 52.6
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.8e-74 283.5 285 51.2
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 2.3e-74 283.1 249 59.4
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.2e-74 282.0 299 50.5
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 5.2e-74 282.0 244 55.7
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.9e-74 281.2 289 52.6
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.2e-73 280.8 237 56.1
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.2e-73 280.8 304 50.0
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 2.0e-73 280.0 274 52.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 2.6e-73 279.6 288 53.1
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 4.4e-73 278.9 285 53.0
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.6e-73 278.1 256 53.5
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.6e-73 278.1 293 50.9
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.3e-72 277.3 181 74.0
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.3e-72 277.3 287 52.3
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.3e-72 277.3 288 52.8
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.7e-72 276.9 253 54.2
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.2e-72 276.6 296 49.7
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.4e-72 274.6 287 52.3
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 8.4e-72 274.6 289 49.1
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.1e-71 274.2 283 53.0
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 5.4e-71 271.9 276 49.3
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 7.1e-71 271.6 291 50.9
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.7e-70 269.6 348 44.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.5e-70 269.2 275 50.5
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.0e-69 267.7 275 50.2
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.0e-69 267.7 266 47.7
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 5.1e-69 265.4 344 43.0
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 3.3e-68 262.7 253 51.4
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 4.3e-68 262.3 266 46.6
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 4.3e-68 262.3 266 46.6
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 9.9e-65 251.1 277 48.7
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.1e-63 247.7 282 44.0
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-63 247.3 214 58.9
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.5e-60 236.5 282 45.7
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.8e-59 233.0 279 44.8
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.0e-58 229.2 231 55.4
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 2.0e-57 226.9 174 64.4
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 8.4e-56 221.5 239 50.2
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.2e-54 217.6 209 55.0
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 3.5e-54 216.1 174 62.6
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.3e-53 214.2 249 48.6
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.9e-48 196.4 140 69.3
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.8e-45 187.2 284 40.8
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.6e-43 180.6 167 56.3
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.3e-42 175.6 186 51.1
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.3e-42 175.6 278 38.1
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.0e-42 174.9 181 54.1
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.1e-39 167.9 250 40.4
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.3e-37 161.0 327 32.4
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.8e-37 160.6 183 46.4
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.5e-36 156.8 151 53.0
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.3e-36 156.0 222 40.5
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 6.3e-35 152.1 103 68.0
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.2e-35 151.8 124 60.5
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.1e-34 149.8 128 57.0
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.1e-34 149.8 420 30.0
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.4e-31 141.0 276 31.5
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 2.5e-31 140.2 262 33.6
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 5.1e-29 132.5 165 43.0
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.3e-28 129.4 177 42.4
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.3e-27 127.9 246 32.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.2e-25 121.3 232 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 5.9e-25 119.0 236 31.8
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.9e-25 119.0 255 36.1
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.1e-23 114.8 86 64.0
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.1e-23 114.8 186 41.9
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 5.1e-21 105.9 107 54.2
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 3.7e-19 99.8 251 33.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 6.9e-18 95.5 141 38.3
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 5.9e-17 92.4 203 31.0
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.3e-16 91.3 65 67.7
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 6.5e-16 89.0 141 35.5
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 6.5e-16 89.0 141 35.5
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 8.5e-16 88.6 123 43.9
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 1.1e-15 88.2 65 64.6
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 4.7e-14 82.8 61 63.9
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 6.1e-14 82.4 119 41.2
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.4e-13 81.3 61 65.6
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 1.8e-13 80.9 70 62.9
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 5.2e-13 79.3 131 32.1
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 2.2e-11 73.9 95 38.9
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 1.3e-08 64.7 87 42.5
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 3.8e-08 63.2 40 67.5
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 8.0e-06 55.5 43 60.5


User provided reference genes

Program Settings