Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 5.1e-57 224.2 112 100.0
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 5.3e-54 214.2 112 96.4
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 7.6e-53 210.3 116 92.2
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 1.5e-45 186.0 112 83.9
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 5.0e-44 181.0 112 82.1
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 6.5e-44 180.6 111 82.0
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 6.5e-44 180.6 111 82.0
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 1.4e-43 179.5 112 78.6
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 1.9e-43 179.1 112 77.7
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 3.2e-43 178.3 112 81.2
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 9.3e-43 176.8 112 78.6
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 1.2e-42 176.4 112 78.6
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 1.6e-42 176.0 112 77.7
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 3.6e-42 174.9 111 79.3
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 6.1e-42 174.1 112 75.9
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 7.9e-42 173.7 112 76.8
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 7.9e-42 173.7 112 75.9
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 7.9e-42 173.7 112 76.8
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 7.9e-42 173.7 112 76.8
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 7.9e-42 173.7 112 75.9
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 1.0e-41 173.3 112 75.9
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.0e-41 173.3 112 76.8
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 1.0e-41 173.3 112 76.8
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 1.8e-41 172.6 112 74.1
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.8e-41 172.6 112 77.7
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 2.3e-41 172.2 112 75.9
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 3.0e-41 171.8 112 75.9
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 3.9e-41 171.4 112 74.1
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 3.9e-41 171.4 112 75.9
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 3.9e-41 171.4 112 75.0
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 5.1e-41 171.0 112 74.1
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 6.7e-41 170.6 112 75.0
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 6.7e-41 170.6 112 73.2
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 6.7e-41 170.6 112 75.0
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 8.7e-41 170.2 112 75.9
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 8.7e-41 170.2 112 72.3
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 1.1e-40 169.9 112 74.1
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 1.1e-40 169.9 112 74.1
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 1.5e-40 169.5 112 74.1
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.5e-40 169.5 112 75.9
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.5e-40 169.5 112 75.9
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 1.9e-40 169.1 112 74.1
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.9e-40 169.1 112 73.2
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.9e-40 169.1 112 73.2
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.9e-40 169.1 112 73.2
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 1.9e-40 169.1 112 71.4
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 2.5e-40 168.7 112 74.1
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 2.5e-40 168.7 112 74.1
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 2.5e-40 168.7 112 73.2
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 3.3e-40 168.3 111 73.9
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 3.3e-40 168.3 112 72.3
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 3.3e-40 168.3 112 75.0
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 3.3e-40 168.3 112 74.1
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 3.3e-40 168.3 112 73.2
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 3.3e-40 168.3 112 72.3
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 4.3e-40 167.9 112 73.2
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 4.3e-40 167.9 112 75.0
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 4.3e-40 167.9 112 74.1
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 4.3e-40 167.9 112 75.0
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 5.7e-40 167.5 112 73.2
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 5.7e-40 167.5 111 75.7
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 5.7e-40 167.5 112 72.3
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 5.7e-40 167.5 109 75.2
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 5.7e-40 167.5 111 74.8
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 7.4e-40 167.2 111 73.0
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 9.7e-40 166.8 110 72.7
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 9.7e-40 166.8 112 75.0
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 9.7e-40 166.8 112 71.4
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 9.7e-40 166.8 110 74.5
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 9.7e-40 166.8 112 73.2
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 1.3e-39 166.4 112 72.3
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 1.3e-39 166.4 112 74.1
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 1.7e-39 166.0 112 75.0
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 2.2e-39 165.6 112 74.1
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 3.7e-39 164.9 112 72.3
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 3.7e-39 164.9 112 71.4
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 3.7e-39 164.9 112 74.1
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 4.8e-39 164.5 112 71.4
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 4.8e-39 164.5 112 75.0
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 4.8e-39 164.5 112 74.1
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 4.8e-39 164.5 112 74.1
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 4.8e-39 164.5 112 74.1
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 4.8e-39 164.5 112 72.3
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 4.8e-39 164.5 112 74.1
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 6.3e-39 164.1 112 71.4
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 6.3e-39 164.1 112 73.2
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 8.2e-39 163.7 112 73.2
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 8.2e-39 163.7 112 72.3
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 8.2e-39 163.7 112 74.1
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 8.2e-39 163.7 112 74.1
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 1.1e-38 163.3 112 74.1
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 1.1e-38 163.3 112 73.2
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 1.1e-38 163.3 112 73.2
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 1.1e-38 163.3 112 70.5
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 1.1e-38 163.3 112 68.8
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 1.4e-38 162.9 112 72.3
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 1.4e-38 162.9 112 72.3
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 1.4e-38 162.9 112 72.3
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 1.4e-38 162.9 112 74.1
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.4e-38 162.9 112 72.3
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 1.8e-38 162.5 112 70.5
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 1.8e-38 162.5 111 73.0
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 2.4e-38 162.2 112 72.3
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 2.4e-38 162.2 110 73.6
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 4.1e-38 161.4 107 73.8
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 5.3e-38 161.0 112 72.3
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 5.3e-38 161.0 112 71.4
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 1.5e-37 159.5 112 72.3
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 1.5e-37 159.5 111 66.7
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 1.5e-37 159.5 104 75.0
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 2.0e-37 159.1 112 72.3
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.6e-37 158.7 112 70.5
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 3.4e-37 158.3 112 71.4
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 3.4e-37 158.3 113 71.7
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 3.4e-37 158.3 119 68.1
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 5.9e-37 157.5 112 67.9
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 7.7e-37 157.1 115 70.4
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 2.2e-36 155.6 112 67.9
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 2.2e-36 155.6 112 67.9
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 3.8e-36 154.8 112 67.9
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 3.8e-36 154.8 112 67.9
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 5.0e-36 154.5 112 68.8
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 6.5e-36 154.1 104 73.1
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 8.5e-36 153.7 112 67.9
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 8.5e-36 153.7 112 68.8
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 1.1e-35 153.3 112 67.9
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 1.1e-35 153.3 112 67.9
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 1.1e-35 153.3 112 67.9
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 1.1e-35 153.3 112 67.9
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 1.1e-35 153.3 112 67.9
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 1.1e-35 153.3 112 67.9
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 1.4e-35 152.9 112 68.8
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 1.4e-35 152.9 112 68.8
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 1.4e-35 152.9 112 67.9
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 9.4e-35 150.2 112 67.0
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 2.1e-34 149.1 112 66.1
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 2.1e-34 149.1 112 66.1
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 2.1e-34 149.1 112 66.1
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 3.6e-34 148.3 112 67.9
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 1.0e-33 146.7 112 66.1
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 1.9e-27 125.9 81 75.3
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 2.1e-26 122.5 69 84.1
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 2.1e-26 122.5 69 84.1
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 5.3e-22 107.8 72 70.8
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 5.9e-21 104.4 110 55.5
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 6.5e-20 100.9 52 90.4
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 4.7e-18 94.7 56 80.4
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 1.4e-17 93.2 86 54.7
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 2.2e-15 85.9 89 50.6
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 1.5e-11 73.2 112 45.5
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 2.7e-10 68.9 72 52.8
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 1.5e-08 63.2 77 49.4
Dinv29105 Davidia involucrata HOM05D004859 ORTHO05D005807 1.8e-06 56.2 28 100.0
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 7.0e-06 54.3 93 39.8


User provided reference genes

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