Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 0.0e+00 1135.6 562 100.0
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 9.7e-282 973.0 544 89.7
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.0e-267 926.4 559 83.5
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.1e-229 800.0 556 74.6
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 4.8e-228 794.7 562 71.7
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 6.9e-227 790.8 579 69.9
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.9e-225 784.6 581 69.0
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 8.4e-225 783.9 584 70.5
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.4e-224 783.1 565 69.2
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 3.2e-224 781.9 547 72.2
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 9.3e-224 780.4 544 74.6
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.5e-223 778.5 544 74.4
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.6e-223 778.1 544 74.4
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.3e-221 771.9 553 70.5
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 4.3e-221 771.5 559 70.8
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 9.6e-221 770.4 490 77.3
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.3e-220 770.0 551 71.0
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 3.6e-220 768.5 563 70.5
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.6e-220 768.5 483 77.0
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.1e-219 765.4 564 70.4
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.2e-218 763.5 532 71.1
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.8e-217 758.4 489 75.7
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 3.8e-217 758.4 565 68.0
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 4.2e-216 755.0 522 71.3
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 9.3e-216 753.8 587 68.5
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.0e-215 751.1 503 73.4
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-214 748.4 544 72.2
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.9e-214 748.4 478 76.2
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 3.3e-213 745.3 515 70.9
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 9.6e-213 743.8 474 76.6
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.4e-211 739.2 560 66.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.5e-210 736.5 518 69.7
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.0e-210 736.1 563 66.6
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 3.4e-210 735.3 567 67.0
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 4.5e-210 734.9 555 66.8
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.8e-209 731.9 570 66.3
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.1e-208 730.3 529 69.0
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.2e-208 728.8 556 68.2
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 5.5e-208 728.0 554 66.8
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.5e-207 725.3 472 76.1
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.5e-207 725.3 554 67.3
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.8e-206 723.0 561 66.8
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 8.7e-206 720.7 560 67.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.1e-205 720.3 563 65.7
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.9e-205 719.5 475 72.8
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.5e-205 719.2 474 72.6
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 5.7e-205 718.0 476 72.5
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 5.7e-205 718.0 475 72.6
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 5.7e-205 718.0 476 72.5
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 5.7e-205 718.0 481 71.9
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 7.4e-205 717.6 553 66.9
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 7.4e-205 717.6 562 66.2
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.1e-204 716.1 474 72.8
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.1e-203 713.8 517 68.9
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.8e-203 713.0 540 67.2
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 3.1e-203 712.2 533 66.2
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 6.9e-203 711.1 560 65.5
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 9.0e-203 710.7 553 66.2
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.0e-203 710.7 563 64.1
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 9.0e-203 710.7 475 72.4
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.2e-202 710.3 550 66.2
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.5e-202 709.9 559 64.4
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.6e-202 709.1 552 65.8
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 7.6e-202 707.6 550 65.6
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 7.6e-202 707.6 553 65.8
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.0e-201 707.2 531 67.6
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.0e-201 707.2 486 71.0
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.0e-201 707.2 469 74.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.7e-201 706.4 543 66.7
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.7e-201 706.4 542 66.6
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 2.2e-201 706.1 552 65.4
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 3.8e-201 705.3 478 72.8
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 6.5e-201 704.5 498 69.5
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.4e-200 703.4 504 69.4
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 3.2e-200 702.2 466 74.0
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 7.1e-200 701.0 543 65.9
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.2e-199 700.3 465 72.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.2e-199 700.3 483 71.8
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.7e-199 699.1 465 72.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 7.9e-199 697.6 572 64.3
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.8e-198 696.4 529 67.1
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.0e-198 695.7 540 66.3
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 3.0e-198 695.7 474 72.2
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 3.0e-198 695.7 473 71.7
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 3.3e-197 692.2 544 66.4
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.7e-197 690.6 501 69.5
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 9.7e-197 690.6 516 67.1
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.2e-196 689.5 449 75.7
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.2e-196 689.5 474 70.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.8e-195 686.4 609 59.8
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.4e-195 686.0 463 73.0
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-194 683.7 462 72.1
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 7.7e-194 681.0 496 68.5
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.3e-193 680.2 572 62.4
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.9e-193 679.1 487 69.2
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 5.0e-193 678.3 462 72.7
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.4e-192 676.8 458 71.4
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.9e-192 676.4 499 67.1
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 9.4e-192 674.1 487 67.6
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.2e-191 673.7 686 55.4
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.7e-191 672.5 525 64.4
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.6e-191 671.8 471 69.0
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.6e-191 671.8 473 69.8
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 6.1e-191 671.4 531 65.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.4e-190 670.2 512 65.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.9e-190 668.7 520 64.6
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.5e-189 666.0 459 70.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.3e-189 665.6 477 68.1
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.3e-188 663.7 462 71.6
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 7.2e-184 647.9 508 64.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 9.4e-184 647.5 556 62.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 9.4e-184 647.5 598 58.2
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.2e-180 636.3 557 60.1
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.7e-174 614.8 463 64.1
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 4.5e-170 602.1 549 60.7
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.2e-168 595.9 551 60.4
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 7.7e-162 574.7 363 76.3
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.0e-161 574.3 366 75.1
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 6.5e-161 571.6 391 71.9
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.7e-159 566.2 508 57.3
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.0e-150 536.2 490 59.8
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.0e-149 533.5 470 56.4
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.2e-146 524.2 362 71.5
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 7.3e-144 515.0 470 55.1
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-142 510.8 349 71.9
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.4e-139 500.0 369 67.8
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.1e-139 499.2 469 54.4
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 4.9e-132 475.7 326 70.6
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.2e-130 471.1 408 63.7
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 7.3e-120 435.3 358 64.8
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.7e-116 424.1 289 70.2
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-107 394.0 313 68.4
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.3e-103 381.3 279 66.3
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.8e-102 377.5 475 44.6
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 2.4e-102 377.1 235 75.7
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 4.0e-102 376.3 482 43.8
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.6e-95 354.4 219 77.6
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.1e-95 354.0 212 78.3
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 3.7e-95 353.2 227 75.8
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.1e-94 351.7 302 59.3
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.8e-94 350.9 216 76.4
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.4e-94 350.5 314 60.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 9.3e-91 338.6 295 57.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 3.4e-85 320.1 453 40.8
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 2.5e-83 313.9 204 71.1
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.7e-80 302.8 187 81.3
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 2.8e-79 300.4 460 38.7
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.7e-76 291.2 179 79.3
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.2e-68 264.2 266 50.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.8e-63 246.5 261 54.0
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.6e-61 240.7 184 69.6
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 5.0e-60 236.5 484 34.3
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.0e-56 224.6 193 58.0
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.5e-51 206.5 146 70.5
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.7e-50 204.1 283 43.8
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.4e-46 191.0 114 79.8
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-45 188.0 125 68.0
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 6.1e-42 176.4 124 64.5
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.4e-41 175.3 125 64.0
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 4.9e-39 166.8 185 54.6
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.8e-34 151.0 313 35.5
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.4e-33 148.7 153 52.3
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 4.0e-33 147.1 96 69.8
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 8.9e-33 146.0 309 34.6
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.1e-30 139.0 100 67.0
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.5e-29 134.0 80 76.2
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.7e-28 131.7 77 79.2
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.0e-28 131.0 81 72.8
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.0e-28 130.2 76 81.6
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 4.3e-27 127.1 102 67.6
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 6.2e-26 123.2 64 92.2
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 2.7e-21 107.8 98 56.1
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.0e-21 106.7 64 75.0
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 5.0e-20 103.6 90 62.2
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.6e-18 98.6 80 65.0
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 2.8e-18 97.8 78 53.8
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 6.2e-18 96.7 51 84.3
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 5.2e-17 93.6 92 51.1
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 8.9e-17 92.8 65 66.2
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-14 85.9 84 53.6
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 5.1e-12 77.0 48 81.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.6e-10 72.0 162 34.0
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 8.1e-10 69.7 46 65.2
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.8e-09 68.6 64 54.7
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 8.9e-09 66.2 113 39.8
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 4.9e-07 60.5 39 64.1
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.1e-06 57.4 53 58.5


User provided reference genes

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