Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 3.2e-204 714.9 374 100.0
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 2.2e-176 622.5 378 86.2
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 6.3e-168 594.3 377 82.8
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 1.1e-159 567.0 377 80.4
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.1e-159 567.0 377 80.4
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 4.5e-158 561.6 377 79.8
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.7e-157 559.7 377 79.8
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.9e-148 529.6 374 75.9
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 1.9e-140 503.1 384 73.7
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 1.9e-140 503.1 363 76.3
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 1.9e-140 503.1 383 73.9
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 1.8e-138 496.5 381 70.9
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 4.0e-138 495.4 369 75.6
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.5e-137 493.4 377 69.5
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 3.4e-137 492.3 381 70.1
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 5.7e-137 491.5 384 72.1
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 2.2e-136 489.6 381 69.8
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 3.7e-136 488.8 381 69.8
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 1.4e-135 486.9 387 71.1
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 1.4e-135 486.9 397 70.3
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 5.4e-135 485.0 380 69.5
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 9.1e-135 484.2 330 78.2
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 2.3e-133 479.6 384 70.3
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 3.8e-133 478.8 385 70.6
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 2.1e-131 473.0 361 73.7
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 2.8e-131 472.6 385 69.4
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 3.4e-129 465.7 373 71.3
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 4.4e-129 465.3 375 70.1
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 9.8e-129 464.2 375 69.9
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 1.7e-128 463.4 387 67.4
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 2.2e-128 463.0 382 70.2
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 3.7e-128 462.2 373 69.2
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 3.7e-128 462.2 425 63.5
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 6.3e-128 461.5 387 66.4
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 8.3e-128 461.1 376 69.9
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 8.3e-128 461.1 376 69.9
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 8.3e-128 461.1 344 73.5
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 1.1e-127 460.7 385 69.4
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 1.8e-127 459.9 383 66.8
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 9.2e-127 457.6 331 75.5
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 9.2e-127 457.6 339 74.3
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 2.7e-126 456.1 378 67.7
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 3.5e-126 455.7 383 67.1
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 1.3e-125 453.8 386 67.9
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.3e-125 453.8 330 75.8
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 1.7e-125 453.4 381 68.0
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 2.9e-125 452.6 376 67.6
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 1.9e-124 449.9 382 65.7
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 3.3e-124 449.1 335 74.0
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 9.5e-124 447.6 379 68.1
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 1.2e-123 447.2 319 77.4
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 1.6e-123 446.8 381 65.9
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.1e-123 446.4 374 68.4
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 8.0e-123 444.5 381 67.2
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 1.0e-122 444.1 398 64.3
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 1.4e-122 443.7 335 72.5
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 1.4e-122 443.7 381 65.6
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 1.8e-122 443.4 393 65.1
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 3.0e-122 442.6 381 65.9
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 6.8e-122 441.4 259 86.9
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 8.9e-122 441.0 323 75.5
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 1.5e-121 440.3 384 65.9
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 2.0e-121 439.9 323 75.5
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 2.0e-121 439.9 378 65.3
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 2.0e-121 439.9 332 72.3
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 3.4e-121 439.1 332 72.3
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 4.4e-121 438.7 384 64.3
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 4.4e-121 438.7 334 70.7
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 1.3e-120 437.2 325 74.5
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 2.9e-120 436.0 373 66.0
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 4.9e-120 435.3 379 64.6
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 6.4e-120 434.9 304 78.9
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 6.4e-120 434.9 383 65.0
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 1.9e-119 433.3 377 66.0
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 9.2e-119 431.0 320 73.4
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.2e-118 430.6 379 65.4
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 7.8e-118 427.9 380 65.3
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 3.3e-116 422.5 313 72.5
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 1.8e-114 416.8 247 88.3
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 1.8e-114 416.8 379 63.3
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 1.5e-113 413.7 386 60.9
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 2.7e-110 402.9 387 62.8
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 7.8e-110 401.4 352 64.5
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 1.9e-108 396.7 325 68.3
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 6.2e-107 391.7 526 48.9
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 6.2e-107 391.7 393 57.3
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 2.3e-106 389.8 268 74.6
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 4.0e-106 389.0 531 48.0
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 1.2e-105 387.5 311 70.1
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 2.0e-105 386.7 328 65.2
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 1.1e-103 380.9 360 58.6
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 1.4e-103 380.6 335 63.6
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.7e-102 376.3 411 55.2
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 2.3e-101 373.2 242 81.0
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 3.0e-101 372.9 269 71.7
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 1.1e-100 370.9 396 57.1
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 2.5e-100 369.8 353 62.6
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 1.6e-99 367.1 312 63.1
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 8.1e-99 364.8 290 65.9
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 5.2e-98 362.1 295 69.2
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 5.8e-97 358.6 209 88.5
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 7.1e-95 351.7 354 59.6
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 6.0e-94 348.6 290 62.1
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 4.2e-87 325.9 278 64.7
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 3.5e-86 322.8 424 51.9
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 3.1e-82 309.7 391 52.4
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 9.0e-82 308.1 292 63.7
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 5.4e-79 298.9 274 57.3
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 1.8e-77 293.9 263 58.6
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 1.3e-75 287.7 178 85.4
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 4.5e-73 279.3 260 60.0
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 2.5e-71 273.5 187 74.3
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 1.8e-69 267.3 266 57.1
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.3e-69 266.9 259 55.2
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 6.2e-67 258.8 258 57.4
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 1.3e-64 251.1 157 81.5
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.3e-61 241.1 279 48.4
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 5.9e-57 225.7 129 88.4
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 2.2e-56 223.8 130 87.7
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 3.6e-54 216.5 136 78.7
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 1.2e-49 201.4 115 91.3
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.7e-40 171.0 105 81.0
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 9.4e-39 165.2 253 38.7
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-27 128.3 187 39.6
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 1.1e-26 125.2 176 43.8
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 4.5e-25 119.8 82 78.0
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 6.1e-22 109.4 90 65.6
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.1e-14 84.3 152 45.4
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 4.4e-12 76.6 41 95.1
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 5.7e-12 76.3 115 46.1
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 4.1e-10 70.1 242 26.9
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 5.0e-08 63.2 36 83.3
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 1.2e-06 58.5 51 56.9


User provided reference genes

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