Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 9.3e-156 553.5 282 100.0
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 7.1e-148 527.3 282 95.0
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 7.1e-148 527.3 282 94.7
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 3.5e-139 498.4 282 88.3
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.8e-138 496.1 282 87.6
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.1e-138 494.6 282 86.9
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.7e-138 493.8 282 87.2
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.1e-135 486.9 282 85.8
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 4.0e-135 485.0 282 84.4
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 5.3e-135 484.6 282 85.8
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 3.4e-134 481.9 282 84.0
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 1.7e-133 479.6 282 83.0
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.7e-133 479.6 282 83.3
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.7e-133 479.6 282 83.3
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 2.9e-133 478.8 282 83.0
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 6.5e-133 477.6 282 81.9
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 6.5e-133 477.6 282 82.3
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 8.4e-133 477.2 282 84.0
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-132 476.9 282 82.3
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.4e-132 476.5 282 81.6
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 1.4e-132 476.5 280 81.4
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 2.5e-132 475.7 282 83.7
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 4.2e-132 474.9 282 81.9
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 9.3e-132 473.8 282 82.6
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.2e-131 473.4 280 82.5
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 2.7e-131 472.2 282 81.9
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 2.7e-131 472.2 282 81.9
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 3.5e-131 471.9 282 82.3
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 6.0e-131 471.1 281 81.5
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 7.9e-131 470.7 282 81.6
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.8e-130 469.5 282 80.5
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 8.7e-130 467.2 282 80.9
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.1e-129 466.8 277 84.1
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 1.5e-129 466.5 282 80.5
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 5.7e-129 464.5 282 79.1
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 1.3e-128 463.4 282 78.7
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 1.3e-128 463.4 282 79.4
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 1.3e-128 463.4 281 79.7
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 3.7e-128 461.8 282 81.9
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 4.8e-128 461.5 282 77.7
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 8.2e-128 460.7 282 79.1
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.1e-127 460.3 282 78.7
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.4e-127 459.9 282 79.1
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.4e-127 459.9 282 79.1
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 1.8e-127 459.5 282 77.3
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 3.1e-127 458.8 293 76.8
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 3.1e-127 458.8 282 78.0
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 4.0e-127 458.4 282 79.1
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 6.9e-127 457.6 282 80.9
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 9.0e-127 457.2 282 78.7
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.2e-126 456.8 282 78.4
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.5e-126 456.4 284 78.5
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.5e-126 456.4 282 78.4
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 2.0e-126 456.1 282 78.7
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 7.6e-126 454.1 282 78.4
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 1.0e-125 453.8 282 79.1
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 1.7e-125 453.0 282 74.8
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 2.2e-125 452.6 282 77.7
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 2.9e-125 452.2 282 77.0
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 8.4e-125 450.7 282 78.0
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 1.9e-124 449.5 282 77.7
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 7.1e-124 447.6 282 76.2
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 7.1e-124 447.6 286 76.6
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 1.2e-123 446.8 282 75.2
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 1.0e-122 443.7 341 67.2
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 1.3e-122 443.4 282 75.9
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 1.3e-122 443.4 282 74.5
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.8e-122 443.0 269 77.3
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 5.1e-122 441.4 283 76.7
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 6.7e-122 441.0 282 77.7
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.9e-121 439.5 288 74.7
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.5e-121 439.1 316 69.0
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 4.3e-121 438.3 290 74.8
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 4.3e-121 438.3 283 76.7
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 5.7e-121 438.0 266 80.8
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 7.4e-121 437.6 283 77.4
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 9.7e-121 437.2 278 75.2
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.1e-119 433.7 283 75.3
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 5.3e-119 431.4 283 74.6
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 9.0e-119 430.6 283 76.0
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 9.0e-119 430.6 283 75.6
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 9.0e-119 430.6 266 80.5
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.5e-118 429.9 283 75.6
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 2.0e-118 429.5 285 77.2
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 2.6e-118 429.1 283 74.9
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 4.5e-118 428.3 281 74.4
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 5.9e-118 427.9 286 75.9
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 1.3e-117 426.8 282 74.1
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 2.2e-117 426.0 282 72.7
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 2.9e-117 425.6 266 76.3
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 1.1e-116 423.7 282 75.9
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.9e-116 422.9 282 74.8
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 3.2e-116 422.2 279 73.1
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 4.2e-116 421.8 286 74.8
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 4.2e-116 421.8 286 74.1
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 4.2e-116 421.8 286 74.1
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 4.2e-116 421.8 266 76.7
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 4.2e-116 421.8 282 78.0
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 9.4e-116 420.6 286 74.1
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 9.4e-116 420.6 286 74.1
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 1.6e-115 419.9 286 73.8
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 1.6e-115 419.9 286 73.4
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.6e-115 419.9 286 74.1
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 2.1e-115 419.5 286 74.8
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 1.4e-114 416.8 281 72.6
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 1.8e-114 416.4 295 72.9
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 2.3e-114 416.0 286 73.1
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.9e-114 415.2 286 72.7
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 5.1e-114 414.8 286 70.6
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 6.7e-114 414.5 266 74.4
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.5e-113 413.3 282 74.8
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 2.0e-113 412.9 313 67.4
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.5e-113 412.5 267 75.7
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 7.4e-113 411.0 282 69.1
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 7.4e-113 411.0 282 69.1
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 4.8e-112 408.3 283 72.1
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 8.2e-112 407.5 325 64.0
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.4e-111 406.8 272 75.0
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 1.4e-111 406.8 276 73.2
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 5.9e-110 401.4 286 67.8
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 6.5e-109 397.9 282 70.6
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 8.5e-109 397.5 282 71.6
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 8.5e-109 397.5 282 71.6
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 4.2e-108 395.2 240 78.8
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.5e-108 394.8 281 69.0
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 3.0e-106 389.0 272 72.8
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 5.1e-106 388.3 306 65.0
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 5.1e-106 388.3 247 74.5
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 2.2e-104 382.9 250 75.6
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 1.1e-103 380.6 287 66.6
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 4.5e-102 375.2 213 85.9
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 2.2e-101 372.9 283 66.8
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 5.0e-101 371.7 283 61.8
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 6.5e-101 371.3 276 69.6
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.5e-100 370.2 282 68.8
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.6e-99 366.7 225 81.3
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 8.0e-99 364.4 231 74.5
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 1.4e-98 363.6 341 59.2
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.2e-98 361.7 279 64.9
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 5.7e-97 358.2 266 65.8
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.5e-94 348.6 258 70.2
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 1.1e-92 344.0 213 76.1
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 3.1e-87 325.9 267 60.3
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 8.5e-85 317.8 249 67.5
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 9.1e-79 297.7 281 59.8
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 2.5e-76 289.7 283 54.1
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 2.3e-74 283.1 213 60.6
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.5e-73 280.4 240 59.2
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.6e-57 226.5 282 52.1
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.2e-55 219.5 326 46.3
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 2.1e-54 216.9 172 62.8
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 3.0e-53 213.0 173 59.0
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 5.6e-52 208.8 172 63.4
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.2e-49 201.1 220 56.4
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 4.6e-46 189.1 120 69.2
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 8.6e-45 184.9 269 43.5
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.6e-41 173.3 122 67.2
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.5e-36 157.5 180 50.0
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.2e-31 139.4 283 40.3
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 1.3e-27 127.9 275 38.5
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.4e-26 124.4 85 64.7
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 2.6e-25 120.2 224 32.1
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.4e-24 115.2 175 43.4
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.6e-22 110.9 120 47.5
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.1e-22 110.5 66 84.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.9e-22 108.6 128 48.4
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.8e-19 100.1 94 55.3
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.5e-15 87.0 93 55.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.1e-13 79.3 47 83.0


User provided reference genes

Program Settings