Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.9e-249 864.8 437 100.0
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.0e-230 803.1 435 92.6
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 6.7e-230 800.4 437 92.4
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.4e-222 776.2 435 89.0
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.2e-221 773.1 435 88.5
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.3e-220 767.3 435 87.8
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.1e-219 765.0 435 87.4
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.3e-219 764.2 435 87.6
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 5.4e-187 657.9 440 77.0
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 9.2e-187 657.1 434 76.3
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.5e-186 655.2 436 76.8
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 7.8e-186 654.1 438 76.9
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.0e-185 652.1 436 76.6
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 5.1e-185 651.4 436 75.0
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 8.6e-185 650.6 437 75.5
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 5.6e-184 647.9 437 76.0
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 8.1e-183 644.0 436 74.1
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.1e-182 643.7 436 74.8
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.5e-181 639.8 436 74.3
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.0e-181 639.4 436 73.4
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.6e-181 639.0 436 73.4
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 5.8e-181 637.9 436 73.6
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 2.2e-180 636.0 442 74.2
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 3.2e-179 632.1 433 74.1
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 2.1e-178 629.4 438 73.1
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.7e-177 626.3 450 72.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.5e-176 623.2 435 72.6
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.5e-176 623.2 438 72.6
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.5e-176 623.2 435 71.7
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 3.3e-176 622.1 436 71.3
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.3e-176 622.1 436 72.5
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 2.8e-175 619.0 433 73.4
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 4.7e-175 618.2 436 73.6
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 4.7e-175 618.2 436 73.4
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 6.2e-175 617.8 435 71.5
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 8.1e-175 617.5 435 72.0
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 5.2e-174 614.8 437 72.5
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 5.2e-174 614.8 437 72.5
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 5.2e-174 614.8 435 72.2
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.6e-173 612.5 437 72.3
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 7.6e-173 610.9 466 67.8
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 3.8e-172 608.6 436 70.0
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 3.2e-171 605.5 411 74.2
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 5.4e-171 604.7 455 67.5
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 9.2e-171 604.0 440 70.7
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 3.5e-170 602.1 438 70.8
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 7.8e-170 600.9 461 68.5
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.0e-169 600.5 456 67.1
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 5.1e-169 598.2 438 70.1
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.9e-168 596.3 446 69.5
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.5e-168 595.9 436 69.5
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.5e-168 595.9 436 69.5
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 8.1e-167 590.9 450 67.1
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.4e-166 589.3 438 67.6
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.4e-165 585.5 438 68.7
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 9.9e-165 583.9 438 68.0
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 4.9e-164 581.6 403 71.5
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 6.4e-164 581.3 431 66.8
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 4.2e-163 578.6 437 67.7
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.7e-162 575.9 405 73.3
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 4.6e-162 575.1 393 75.8
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.0e-161 573.9 433 66.5
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.7e-161 573.2 436 66.7
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.3e-161 572.8 330 85.2
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 3.9e-161 572.0 434 67.7
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.6e-160 568.2 431 65.9
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.6e-159 565.5 444 66.9
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.4e-158 563.5 440 67.3
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 9.0e-158 560.8 438 64.6
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-157 560.5 393 73.8
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 4.9e-156 555.1 454 61.9
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.1e-155 553.9 438 63.9
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 5.4e-155 551.6 439 63.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 7.1e-155 551.2 436 65.4
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.6e-154 550.1 452 62.4
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 4.6e-154 548.5 437 62.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.3e-153 547.0 454 61.9
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.3e-153 546.2 458 61.6
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.0e-153 545.8 459 61.4
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.9e-152 543.1 437 62.9
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 4.3e-152 542.0 442 63.3
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 3.7e-151 538.9 435 66.2
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.4e-150 537.0 441 66.9
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 3.1e-150 535.8 444 64.2
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.5e-149 533.5 455 62.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.1e-147 527.3 419 66.3
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 5.5e-147 525.0 455 61.3
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 7.1e-147 524.6 432 63.4
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 6.7e-145 518.1 437 61.3
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.5e-144 516.9 386 67.6
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.5e-144 516.9 379 69.7
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 2.5e-144 516.2 436 62.4
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 4.3e-144 515.4 436 61.9
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 7.4e-144 514.6 398 68.3
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.8e-143 512.7 398 68.1
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 9.0e-142 507.7 440 61.4
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.8e-141 505.0 440 60.7
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.8e-141 505.0 395 66.1
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 8.4e-140 501.1 385 68.6
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.4e-139 500.4 319 78.4
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.9e-139 500.0 384 64.3
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 3.2e-139 499.2 420 60.7
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.0e-137 492.7 437 63.2
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 3.3e-136 489.2 344 73.0
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.8e-135 485.3 352 70.5
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.4e-134 483.0 467 58.0
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 6.9e-134 481.5 424 59.9
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.5e-133 478.8 307 76.5
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 2.2e-132 476.5 433 60.0
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.2e-131 472.2 422 58.1
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.7e-128 461.1 419 57.5
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.8e-127 459.5 419 56.1
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 4.8e-127 458.8 428 57.2
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.6e-125 453.0 300 76.7
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 5.0e-124 448.7 434 55.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.0e-116 424.5 441 54.4
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.3e-116 424.1 387 58.1
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.0e-116 422.2 355 61.4
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.0e-113 414.5 435 53.8
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.4e-102 376.7 325 61.8
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.6e-98 364.0 443 49.7
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 6.1e-98 362.1 277 66.4
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.2e-96 357.8 281 64.4
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 3.4e-96 356.3 287 64.1
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 5.9e-93 345.5 281 63.3
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.7e-93 345.1 285 63.2
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-89 334.3 354 51.7
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 2.0e-88 330.5 294 59.5
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 8.3e-87 325.1 281 60.5
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.3e-84 317.8 233 67.0
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 3.9e-84 316.2 329 50.5
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 1.1e-75 288.1 365 46.8
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 6.2e-74 282.3 157 93.0
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.5e-72 277.7 157 91.1
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.4e-72 276.6 156 90.4
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.4e-72 276.6 156 90.4
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 2.4e-70 270.4 155 89.7
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 2.3e-68 263.8 162 75.3
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.9e-67 260.8 156 85.9
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 9.5e-67 258.5 204 63.2
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.0e-64 250.8 145 86.9
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.4e-62 244.6 499 36.3
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 4.3e-59 233.0 141 81.6
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 4.7e-58 229.6 278 48.9
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.1e-57 226.9 133 88.7
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.2e-55 220.7 184 64.7
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.1e-54 218.4 235 51.5
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 6.6e-52 209.1 182 60.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 8.7e-52 208.8 122 84.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.3e-50 204.9 485 33.0
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 4.4e-48 196.4 132 81.1
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.1e-46 191.8 154 59.7
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 8.1e-42 175.6 308 39.3
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 5.3e-41 172.9 99 90.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.2e-40 171.8 178 56.2
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 4.5e-40 169.9 106 82.1
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 5.6e-35 152.9 129 59.7
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 3.1e-33 147.1 119 63.0
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 2.5e-30 137.5 146 53.4
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.2e-23 114.4 215 36.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.1e-22 112.1 68 85.3
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-22 111.7 98 59.2
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.1e-20 103.2 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.7e-18 97.1 56 91.1
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 5.0e-15 86.7 257 29.6
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 7.2e-14 82.8 70 57.1
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 8.8e-12 75.9 57 66.7
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-06 58.5 50 58.0
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.2e-06 57.0 61 49.2


User provided reference genes

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