Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1036600 Malus domestica HOM05D006035 ORTHO05D007155 1.3e-51 206.1 104 100.0
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 4.4e-47 191.0 102 93.1
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 3.6e-41 171.4 101 84.2
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 3.5e-36 154.8 100 75.0
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 7.4e-34 147.1 100 74.0
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 4.0e-32 141.4 104 69.2
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 2.2e-30 135.6 105 65.7
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 2.9e-30 135.2 100 66.0
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 3.8e-30 134.8 99 64.6
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 4.9e-30 134.4 99 68.7
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 1.1e-29 133.3 99 66.7
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.5e-29 132.1 98 69.4
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 5.5e-29 131.0 98 68.4
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 5.5e-29 131.0 99 64.6
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 7.1e-29 130.6 100 66.0
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 1.6e-28 129.4 99 60.6
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 1.6e-28 129.4 98 66.3
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 2.1e-28 129.0 97 62.9
Glyma.07G238700 Glycine max HOM05D006035 ORTHO05D007155 3.5e-28 128.3 97 61.9
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 4.6e-28 127.9 107 58.9
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 6.0e-28 127.5 107 59.8
Lalb_Chr13g0298531 Lupinus albus HOM05D006035 ORTHO05D007155 7.9e-28 127.1 97 61.9
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 1.3e-27 126.3 99 59.6
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 1.3e-27 126.3 99 60.6
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 1.3e-27 126.3 97 62.9
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 2.3e-27 125.6 105 62.9
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.3e-27 125.6 100 66.0
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.3e-27 125.6 100 66.0
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 2.3e-27 125.6 100 66.0
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 2.3e-27 125.6 102 60.8
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 3.0e-27 125.2 98 65.3
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 3.9e-27 124.8 104 62.5
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 5.1e-27 124.4 107 64.5
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 5.1e-27 124.4 98 61.2
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 5.1e-27 124.4 101 60.4
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 1.1e-26 123.2 102 61.8
Phvul.005G129600 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 1.9e-26 122.5 100 64.0
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 1.9e-26 122.5 97 59.8
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 4.3e-26 121.3 99 59.6
Phvul.003G115800 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 1.6e-25 119.4 99 62.6
Lj6P692T31 Lonicera japonica HOM05D006035 ORTHO05D007155 4.8e-25 117.9 96 59.4
Hma1.2p1_0013F.1_g008420 Hydrangea macrophylla HOM05D006035 ORTHO05D007155 8.2e-25 117.1 104 59.6
TWI53G1140 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 1.4e-24 116.3 97 60.8
PSO210G7669 Papaver somniferum HOM05D006035 ORTHO05D007155 1.8e-24 115.9 105 55.2
Aa31LG11G8120 Aethionema arabicum HOM05D006035 ORTHO05D007155 2.4e-24 115.5 97 58.8
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 2.4e-24 115.5 99 58.6
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 2.4e-24 115.5 97 58.8
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 3.1e-24 115.2 113 57.5
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 3.1e-24 115.2 109 62.4
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 4.1e-24 114.8 94 58.5
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 4.1e-24 114.8 108 54.6
Rhsim02G0003100 Rhododendron simsii HOM05D006035 ORTHO05D007155 4.1e-24 114.8 97 59.8
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 4.1e-24 114.8 97 60.8
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 5.3e-24 114.4 95 58.9
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 5.3e-24 114.4 95 58.9
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 5.3e-24 114.4 95 58.9
FAN07G1803 Fragaria x ananassa HOM05D006035 ORTHO05D007155 5.3e-24 114.4 68 82.4
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 5.3e-24 114.4 101 55.4
PSO761G0247 Papaver somniferum HOM05D006035 ORTHO05D007155 5.3e-24 114.4 105 54.3
THA.LOC104818878 Tarenaya hassleriana HOM05D006035 ORTHO05D007155 5.3e-24 114.4 102 57.8
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 9.0e-24 113.6 95 57.9
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 1.5e-23 112.8 100 55.0
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 1.5e-23 112.8 95 57.9
Sabra08G0078500 Salix brachista HOM05D006035 ORTHO05D007155 2.0e-23 112.5 108 58.3
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 3.4e-23 111.7 97 55.7
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 4.5e-23 111.3 98 56.1
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 4.5e-23 111.3 107 53.3
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 4.5e-23 111.3 100 56.0
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 4.5e-23 111.3 96 56.2
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 5.8e-23 110.9 95 56.8
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 5.8e-23 110.9 108 58.3
HanXRQChr05g0146001 Helianthus annuus HOM05D006035 ORTHO05D007155 7.6e-23 110.5 97 57.7
Lsat_1_v5_gn_1_41620 Lactuca sativa HOM05D006035 ORTHO05D007155 1.0e-22 110.2 97 55.7
vmacro15178 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 1.0e-22 110.2 97 54.6
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.7e-22 109.4 102 54.9
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 1.7e-22 109.4 97 58.8
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 2.2e-22 109.0 99 54.5
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.2e-22 109.0 101 54.5
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.2e-22 109.0 101 54.5
ECA246G4755 Erigeron canadensis HOM05D006035 ORTHO05D007155 2.2e-22 109.0 96 55.2
HanXRQChr11g0353881 Helianthus annuus HOM05D006035 ORTHO05D007155 2.2e-22 109.0 102 52.0
Sopen01g024580 Solanum pennellii HOM05D006035 ORTHO05D007155 2.2e-22 109.0 105 54.3
Sp2g19800 Schrenkiella parvula HOM05D006035 ORTHO05D007155 2.9e-22 108.6 95 56.8
SpUn0021_0050 Schrenkiella parvula HOM05D006035 ORTHO05D007155 2.9e-22 108.6 95 56.8
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 5.0e-22 107.8 108 50.9
PGSC0003DMG400001204 Solanum tuberosum HOM05D006035 ORTHO05D007155 5.0e-22 107.8 105 53.3
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 6.5e-22 107.5 103 53.4
ATR0693G356 Amborella trichopoda HOM05D006035 ORTHO05D007155 1.1e-21 106.7 98 53.1
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 1.1e-21 106.7 105 56.2
Eucgr.H04056 Eucalyptus grandis HOM05D006035 ORTHO05D007155 3.2e-21 105.1 123 45.5
Manes.03G205900 Manihot esculenta HOM05D006035 ORTHO05D007155 3.2e-21 105.1 97 52.6
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 4.2e-21 104.8 106 52.8
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.2e-20 103.2 105 52.4
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 1.2e-20 103.2 114 46.5
PGR031G3428 Punica granatum HOM05D006035 ORTHO05D007155 3.5e-20 101.7 105 53.3
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 7.9e-20 100.5 96 55.2
Sc19g0003080 Simmondsia chinensis HOM05D006035 ORTHO05D007155 1.8e-19 99.4 99 47.5
Lsat_1_v5_gn_6_116540 Lactuca sativa HOM05D006035 ORTHO05D007155 2.3e-19 99.0 98 54.1
Lsat_1_v5_gn_6_116560 Lactuca sativa HOM05D006035 ORTHO05D007155 2.3e-19 99.0 97 52.6
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 3.0e-19 98.6 67 70.1
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 5.1e-19 97.8 99 52.5
Duzib052G0321 Durio zibethinus HOM05D006035 ORTHO05D007155 5.7e-18 94.4 97 54.6
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 9.7e-18 93.6 111 48.6
HPP92_008930 Vanilla planifolia HOM05D006035 ORTHO05D007155 6.3e-17 90.9 97 46.4
Actinidia31554 Actinidia chinensis HOM05D006035 ORTHO05D007155 1.1e-16 90.1 66 63.6
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 3.1e-16 88.6 107 45.8
MSTRG.10157 Avicennia marina HOM05D006035 ORTHO05D007155 9.0e-16 87.0 64 62.5
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 9.0e-16 87.0 101 48.5
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 1.5e-15 86.3 88 50.0
Ciclev10006337m.g Citrus clementina HOM05D006035 ORTHO05D007155 4.5e-15 84.7 53 71.7
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 5.9e-15 84.3 89 50.6
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 7.7e-15 84.0 75 53.3
Zm00001eb395970 Zea mays HOM05D006035 ORTHO05D007155 7.9e-12 73.9 106 39.6
SEGI_01581 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 1.8e-11 72.8 98 34.7
HPP92_005426 Vanilla planifolia HOM05D006035 ORTHO05D007155 6.7e-11 70.9 84 36.9
SEGI_08802 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 5.7e-10 67.8 98 33.7
CDE08G1648 Ceratophyllum demersum HOM05D006035 ORTHO05D007155 2.8e-09 65.5 64 42.2
Oeu038773.1 Olea europaea HOM05D006035 ORTHO05D007155 6.3e-09 64.3 91 38.5
Oeu038774.1 Olea europaea HOM05D006035 ORTHO05D007155 6.3e-09 64.3 91 38.5
CSS0018156 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.1e-08 63.5 48 60.4
Aa31LG6G13960 Aethionema arabicum HOM05D000227 ORTHO05D004725 5.3e-08 61.2 96 33.3
SEGI_03909 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 9.1e-08 60.5 115 33.0
Manes.15G000900 Manihot esculenta HOM05D006035 ORTHO05D007155 3.4e-07 58.5 45 57.8
Pp3c16_2040 Physcomitrium patens HOM05D006035 ORTHO05D007155 7.7e-07 57.4 106 28.3
Cpa.g.sc9.45 Carica papaya HOM05D006035 ORTHO05D007155 1.3e-06 56.6 46 56.5
CBR_g28479 Chara braunii HOM05D000227 ORTHO05D007155 1.3e-06 56.6 98 30.6
FAN10G0417 Fragaria x ananassa HOM05D000227 ORTHO05D000139 1.7e-06 56.2 102 31.4
Prupe.1G115600 Prunus persica HOM05D006035 ORTHO05D007155 2.2e-06 55.8 45 60.0
Medtr7g115040 Medicago truncatula HOM05D000227 ORTHO05D000451 5.0e-06 54.7 95 29.5
Lj1g0018674 Lotus japonicus HOM05D000227 ORTHO05D000451 6.5e-06 54.3 95 28.4
TAR362G0119 Trochodendron aralioides HOM05D006035 ORTHO05D007155 6.5e-06 54.3 41 63.4
VMungo0540G0537 Vigna mungo HOM05D000227 ORTHO05D000451 8.5e-06 53.9 95 29.5


User provided reference genes

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