Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1032200 Malus domestica HOM05D000580 ORTHO05D006815 6.3e-32 140.2 73 100.0
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 1.3e-13 79.3 60 66.7
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 5.0e-13 77.4 60 65.0
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.1e-12 76.3 60 63.3
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 1.9e-12 75.5 60 63.3
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.3e-12 74.7 60 61.7
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 5.6e-12 73.9 60 58.3
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.3e-12 73.6 60 60.0
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.2e-11 72.8 60 60.0
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.2e-11 72.8 60 60.0
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 1.2e-11 72.8 60 60.0
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 1.2e-11 72.8 60 60.0
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 1.2e-11 72.8 60 61.7
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-11 72.4 61 57.4
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-11 72.4 60 56.7
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 2.1e-11 72.0 60 56.7
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 58.3
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 58.3
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 56.7
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 56.7
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 56.7
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 56.7
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 56.7
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 56.7
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 56.7
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 56.7
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 56.7
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 60.0
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 60.0
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 2.8e-11 71.6 60 58.3
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 3.6e-11 71.2 60 60.0
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 3.6e-11 71.2 60 56.7
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 3.6e-11 71.2 60 56.7
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 3.6e-11 71.2 60 60.0
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 3.6e-11 71.2 60 60.0
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.7e-11 70.9 60 58.3
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 58.3
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 58.3
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 58.3
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 58.3
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 58.3
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 58.3
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 58.3
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 58.3
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 55.0
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 56.7
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 6.1e-11 70.5 60 58.3
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 8.0e-11 70.1 60 56.7
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.0e-11 70.1 60 56.7
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.0e-11 70.1 60 56.7
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.0e-11 70.1 60 56.7
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 1.0e-10 69.7 60 56.7
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 1.0e-10 69.7 60 56.7
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.0e-10 69.7 60 56.7
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 55.0
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 58.3
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 60.0
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 60.0
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 1.8e-10 68.9 60 60.0
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.3e-10 68.6 60 58.3
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.3e-10 68.6 60 56.7
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 3.1e-10 68.2 60 56.7
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 4.0e-10 67.8 60 55.0
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 5.2e-10 67.4 60 53.3
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 5.2e-10 67.4 60 53.3
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 5.2e-10 67.4 60 53.3
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 5.2e-10 67.4 60 56.7
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 5.2e-10 67.4 60 53.3
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.2e-10 67.4 60 56.7
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 5.2e-10 67.4 59 57.6
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 6.8e-10 67.0 60 56.7
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.2e-09 66.2 60 56.7
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 1.2e-09 66.2 60 55.0
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-09 65.9 59 55.9
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-09 65.5 60 53.3
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.6e-09 65.1 60 55.0
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 3.4e-09 64.7 60 50.0
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.4e-09 64.3 60 55.0
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 5.8e-09 63.9 60 51.7
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 5.8e-09 63.9 51 62.7
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 5.8e-09 63.9 60 56.7
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-08 62.8 60 55.0
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 2.9e-08 61.6 57 52.6
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 3.7e-08 61.2 59 52.5
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 4.9e-08 60.8 60 53.3
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 1.9e-07 58.9 71 46.5
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 1.9e-07 58.9 51 58.8
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 2.4e-07 58.5 53 56.6
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 4.1e-07 57.8 50 56.0
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.1e-07 57.8 50 56.0
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 4.1e-07 57.8 50 56.0
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.1e-07 57.8 50 56.0
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 4.1e-07 57.8 50 56.0
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.4e-07 57.4 60 50.0
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 2.0e-06 55.5 48 54.2
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.8e-06 53.5 53 49.1
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 7.8e-06 53.5 52 51.9


User provided reference genes

Program Settings