Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.0e-148 530.0 259 100.0
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.1e-142 510.0 259 94.6
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 3.8e-132 474.9 259 89.6
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.2e-122 443.4 260 82.7
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.6e-122 441.8 257 84.4
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 4.0e-121 438.3 259 81.1
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.5e-120 436.4 261 81.6
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 4.4e-120 434.9 259 79.9
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 5.8e-120 434.5 261 80.8
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 9.8e-120 433.7 259 78.4
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.7e-119 433.0 259 79.9
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 9.2e-118 427.2 257 80.2
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 2.7e-117 425.6 259 78.8
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 7.8e-117 424.1 259 78.8
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 3.0e-116 422.2 254 80.3
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.1e-115 420.2 259 77.2
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.1e-115 420.2 259 77.2
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 4.3e-115 418.3 257 77.0
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 5.6e-115 417.9 257 77.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 7.3e-115 417.5 259 78.0
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.2e-114 416.8 259 78.0
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.8e-114 415.6 259 76.8
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.6e-114 415.2 259 76.8
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 8.0e-114 414.1 265 76.2
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.8e-113 412.9 259 77.6
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 4.0e-113 411.8 275 72.7
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 8.9e-113 410.6 257 76.3
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.6e-112 409.1 259 76.8
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 4.4e-112 408.3 271 72.7
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 9.8e-112 407.1 257 73.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 9.8e-112 407.1 256 76.6
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.7e-111 406.4 258 75.6
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.9e-111 405.6 257 75.9
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 6.4e-111 404.4 259 74.5
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.1e-110 403.7 260 75.8
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 1.4e-110 403.3 257 75.5
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 7.0e-110 401.0 262 74.0
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 9.2e-110 400.6 269 72.5
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.2e-109 400.2 256 75.4
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.2e-109 400.2 256 74.2
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.6e-109 399.8 263 74.5
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.6e-109 399.8 257 75.5
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.7e-109 399.1 257 73.5
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 3.5e-109 398.7 268 73.9
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.3e-108 396.7 257 73.5
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 5.1e-108 394.8 258 73.3
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 8.6e-108 394.0 268 72.4
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 8.6e-108 394.0 261 73.9
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.1e-107 393.7 266 73.3
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 2.5e-107 392.5 276 71.4
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.6e-107 391.3 257 72.4
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.6e-106 388.7 257 71.2
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 2.3e-105 386.0 260 73.5
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 8.9e-105 384.0 257 71.2
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 8.9e-105 384.0 257 72.0
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.2e-104 383.6 260 73.1
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.2e-104 383.6 270 69.3
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 2.0e-104 382.9 257 71.6
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 3.4e-104 382.1 257 71.6
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 3.4e-104 382.1 259 72.6
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 3.4e-104 382.1 257 71.2
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 5.8e-104 381.3 261 70.1
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 5.8e-104 381.3 263 72.2
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 7.5e-104 380.9 291 64.3
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 3.7e-103 378.6 255 71.8
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 4.9e-103 378.3 257 70.4
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 1.1e-102 377.1 256 70.3
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.1e-102 377.1 255 71.4
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.4e-102 376.7 258 71.3
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.4e-102 375.9 317 60.6
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 4.1e-102 375.2 256 69.9
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 9.2e-102 374.0 257 68.1
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.2e-101 373.6 263 69.6
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.6e-101 373.2 257 70.8
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.1e-101 372.9 259 70.3
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.5e-101 372.1 256 70.3
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.5e-101 372.1 256 70.3
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 3.5e-101 372.1 234 74.8
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 4.6e-101 371.7 257 69.6
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 6.0e-101 371.3 255 70.2
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 6.0e-101 371.3 212 81.6
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.0e-101 371.3 253 68.8
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 7.8e-101 370.9 257 69.3
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 7.8e-101 370.9 257 69.3
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.0e-100 370.5 257 69.6
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.0e-100 370.5 259 69.9
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.3e-100 370.2 257 69.6
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.3e-100 369.4 257 68.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 2.3e-100 369.4 219 78.5
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 3.0e-100 369.0 257 68.9
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.9e-100 368.6 257 69.3
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 5.1e-100 368.2 258 69.4
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 5.1e-100 368.2 258 69.8
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 8.6e-100 367.5 257 70.0
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 1.5e-99 366.7 257 68.9
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 4.3e-99 365.2 263 67.3
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 4.3e-99 365.2 256 67.2
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 9.5e-99 364.0 255 69.4
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.2e-98 363.6 260 68.1
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 3.1e-97 359.0 259 67.2
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 5.2e-97 358.2 263 66.9
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 8.9e-97 357.5 257 65.8
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.0e-96 356.3 214 77.6
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 2.0e-96 356.3 257 66.9
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 4.4e-96 355.1 257 67.7
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 7.6e-96 354.4 257 65.0
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 9.9e-96 354.0 269 63.2
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 6.0e-93 344.7 257 66.9
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.7e-92 343.2 259 62.2
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.3e-92 342.8 257 65.0
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 8.7e-92 340.9 211 76.3
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 8.7e-92 340.9 195 82.6
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.5e-91 340.1 259 64.5
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 2.5e-91 339.3 197 81.7
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 3.3e-91 339.0 237 70.9
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 4.7e-90 335.1 261 65.1
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.4e-87 324.7 197 77.2
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.1e-86 323.9 212 68.4
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.9e-86 323.2 214 69.2
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 2.4e-86 322.8 191 81.2
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 3.2e-86 322.4 191 77.0
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 3.2e-86 322.4 274 57.7
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 6.6e-84 314.7 244 64.8
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 3.6e-82 308.9 182 79.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 4.5e-80 302.0 201 73.1
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 1.6e-77 293.5 170 82.4
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 4.6e-77 292.0 226 63.3
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 3.0e-76 289.3 257 58.0
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.5e-75 287.0 236 59.7
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 4.3e-75 285.4 310 52.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 6.2e-74 281.6 240 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.0e-72 276.6 254 53.9
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.1e-69 266.5 361 44.3
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 4.0e-65 252.3 260 50.4
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.0e-63 247.7 183 66.7
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 1.4e-57 227.3 215 55.3
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.8e-57 226.9 155 67.7
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.5e-56 223.8 265 49.4
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.0e-55 221.1 232 50.4
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.9e-53 211.5 179 55.3
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 3.1e-49 199.5 178 55.1
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 1.4e-46 190.7 137 67.2
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 5.1e-44 182.2 148 60.8
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.1e-43 181.0 127 66.1
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 8.2e-42 174.9 266 36.8
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 1.2e-40 171.0 175 60.0
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.5e-40 169.5 125 64.8
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.6e-37 160.6 103 72.8
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 3.3e-35 152.9 319 32.9
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.3e-34 151.0 96 71.9
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 2.0e-32 143.7 248 35.9
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 9.4e-30 134.8 174 43.1
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.2e-28 129.0 125 50.4
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.7e-26 122.9 166 43.4
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.5e-22 110.9 102 53.9
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 5.5e-22 109.0 55 98.2
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 5.5e-22 109.0 55 98.2
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-20 104.0 79 62.0
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.2e-20 102.4 58 77.6
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.5e-16 89.4 120 41.7
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 7.7e-16 88.6 55 74.5
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.6e-15 85.5 81 58.0
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 3.6e-13 79.7 44 79.5
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 3.6e-13 79.7 44 79.5
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 8.3e-10 68.6 50 64.0
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 2.0e-08 63.9 36 86.1
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.9e-07 60.1 59 45.8
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 6.6e-07 58.9 68 45.6
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.1e-06 58.2 57 47.4


User provided reference genes

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