Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1280400 Malus domestica HOM05D000568 ORTHO05D000628 7.8e-41 170.2 100 100.0
MD03G1278900 Malus domestica HOM05D000568 ORTHO05D000628 1.7e-27 125.9 95 85.3
AL39U10010 Arabidopsis lyrata HOM05D000568 ORTHO05D000628 4.8e-22 107.8 92 76.1
Nn1g09792 Nelumbo nucifera HOM05D000568 ORTHO05D000628 9.3e-18 93.6 86 73.3
Ah.06g195520 Amaranthus hybridus HOM05D000568 ORTHO05D000628 1.0e-16 90.1 90 71.1
ClCG03G010840 Citrullus lanatus HOM05D000568 ORTHO05D000628 1.3e-16 89.7 88 69.3
MBI18_g01956_MAGBIO Magnolia biondii HOM05D000568 ORTHO05D000628 1.8e-16 89.4 119 39.5
SGA_v2.0_scaffold57G20232 Striga asiatica HOM05D000568 ORTHO05D000628 3.0e-16 88.6 88 68.2
TWI59G1193 Tripterygium wilfordii HOM05D000568 ORTHO05D000628 5.1e-16 87.8 86 70.9
QL01p048758 Quercus lobata HOM05D000568 ORTHO05D000628 8.7e-16 87.0 86 69.8
VMungo0720G1879 Vigna mungo HOM05D000568 ORTHO05D000628 8.7e-16 87.0 86 72.1
Cfa006270 Carpinus fangiana HOM05D000568 ORTHO05D000628 1.9e-15 85.9 86 69.8
FAN05G2012 Fragaria x ananassa HOM05D000568 ORTHO05D000628 1.9e-15 85.9 86 69.8
FAN02G1199 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.5e-15 85.5 86 69.8
FAN09G0846 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.5e-15 85.5 86 69.8
FAN14G5758 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.5e-15 85.5 86 69.8
arahy.Tifrunner.gnm1.ann1.MSPK9F Arachis hypogaea HOM05D000568 ORTHO05D000628 3.3e-15 85.1 86 68.6
arahy.Tifrunner.gnm1.ann1.ZG36KZ Arachis hypogaea HOM05D000568 ORTHO05D000628 3.3e-15 85.1 86 68.6
Nn1g09782 Nelumbo nucifera HOM05D000568 ORTHO05D000628 3.3e-15 85.1 82 65.9
Sabra19G0062700 Salix brachista HOM05D000568 ORTHO05D000628 9.6e-15 83.6 102 43.1
DCAR_005818 Daucus carota HOM05D000568 ORTHO05D000628 2.1e-14 82.4 88 64.8
SGA_v2.0_scaffold86G26915 Striga asiatica HOM05D000568 ORTHO05D000628 6.2e-14 80.9 91 64.8
GSVIVG01019119001 Vitis vinifera HOM05D000568 ORTHO05D000628 6.2e-14 80.9 100 62.0
Cc03_g13820 Coffea canephora HOM05D000568 ORTHO05D000628 1.1e-13 80.1 84 64.3
Lj8A196T47 Lonicera japonica HOM05D000568 ORTHO05D000628 1.8e-13 79.3 87 64.4
Oeu062901.3 Olea europaea HOM05D000568 ORTHO05D000628 1.8e-13 79.3 76 73.7
MD03G1280300 Malus domestica HOM05D000568 ORTHO05D000628 2.4e-13 79.0 134 50.0
EL10Ac4g09976 Beta vulgaris HOM05D000568 ORTHO05D000628 2.6e-12 75.5 45 71.1
DCAR_002800 Daucus carota HOM05D000568 ORTHO05D000628 4.5e-12 74.7 88 62.5
vmacro10408 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 4.5e-12 74.7 40 77.5
Pp3c26_12270 Physcomitrium patens HOM05D000568 ORTHO05D000628 5.8e-12 74.3 46 67.4
FAN22G0784 Fragaria x ananassa HOM05D000568 ORTHO05D000628 1.7e-11 72.8 46 67.4
Nitab4.5_0006333g0050 Nicotiana tabacum HOM05D000568 ORTHO05D000628 2.2e-11 72.4 44 65.9
Nn3g21373 Nelumbo nucifera HOM05D000568 ORTHO05D000628 3.8e-11 71.6 132 43.2
MD11G1301200 Malus domestica HOM05D000568 ORTHO05D000628 4.9e-11 71.2 132 47.7
Nn4g25954 Nelumbo nucifera HOM05D000568 ORTHO05D000628 2.5e-10 68.9 86 60.5
Prupe.8G254900 Prunus persica HOM05D000568 ORTHO05D000628 7.1e-10 67.4 132 47.0
Ca_10358_v3 Cicer arietinum L. HOM05D000568 ORTHO05D000628 1.2e-09 66.6 93 40.9
Ca_07974_v3 Cicer arietinum L. HOM05D000568 ORTHO05D000628 1.6e-09 66.2 110 50.0
MBI19_g47701_MAGBIO Magnolia biondii HOM05D000568 ORTHO05D000628 4.6e-09 64.7 93 37.6
SGA_v2.0_scaffold2G01418 Striga asiatica HOM05D000568 ORTHO05D000628 4.6e-09 64.7 35 77.1
Zm00001eb364730 Zea mays HOM05D000568 ORTHO05D000628 4.6e-09 64.7 40 67.5
Pp3c26_12400 Physcomitrium patens HOM05D000568 ORTHO05D000628 1.0e-08 63.5 38 68.4
Oeu021112.1 Olea europaea HOM05D000568 ORTHO05D000628 2.3e-08 62.4 41 61.0
Lj5g0005422 Lotus japonicus HOM05D000568 ORTHO05D000628 3.0e-08 62.0 132 43.2
Oeu040497.1 Olea europaea HOM05D000568 ORTHO05D000628 3.0e-08 62.0 38 65.8
vmacro08112 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 3.0e-08 62.0 97 54.6
CiPaw.07G102500 Carya illinoinensis HOM05D000568 ORTHO05D000628 3.9e-08 61.6 132 43.9
Ah.04g158860 Amaranthus hybridus HOM05D000568 ORTHO05D000628 5.1e-08 61.2 110 50.0
RcHm_v2.0_Chr6g0292971 Rosa chinensis HOM05D000568 ORTHO05D000628 5.1e-08 61.2 132 44.7
SGA_v2.0_scaffold175G39302 Striga asiatica HOM05D000568 ORTHO05D000628 6.7e-08 60.8 41 58.5
Nitab4.5_0002148g0020 Nicotiana tabacum HOM05D000568 ORTHO05D000628 8.7e-08 60.5 100 54.0
FAN12G0132 Fragaria x ananassa HOM05D000568 ORTHO05D000628 1.1e-07 60.1 35 65.7
FAN17G0266 Fragaria x ananassa HOM05D000568 ORTHO05D000628 1.1e-07 60.1 35 65.7
Nitab4.5_0001308g0180 Nicotiana tabacum HOM05D000568 ORTHO05D000628 1.9e-07 59.3 110 45.5
BcaB04g21335 Brassica carinata HOM05D000568 ORTHO05D000628 2.5e-07 58.9 39 56.4
FvH4_2g24990 Fragaria vesca HOM05D000568 ORTHO05D000628 2.5e-07 58.9 132 43.9
FAN24G0913 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.5e-07 58.9 132 43.9
FAN27G1623 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.5e-07 58.9 132 43.9
PRCOL_00006332 Prasinoderma coloniale HOM05D000568 ORTHO05D000628 3.3e-07 58.5 47 57.4
Manes.15G014500 Manihot esculenta HOM05D000568 ORTHO05D000628 4.3e-07 58.2 125 44.0
TAR627G0456 Trochodendron aralioides HOM05D000568 ORTHO05D000628 4.3e-07 58.2 46 54.3
FAN15G1036 Fragaria x ananassa HOM05D000568 ORTHO05D000628 5.7e-07 57.8 132 43.2
Lj2A1187T56 Lonicera japonica HOM05D000568 ORTHO05D000628 5.7e-07 57.8 40 60.0
unitig_749.g13505 Utricularia gibba HOM05D000568 ORTHO05D000628 5.7e-07 57.8 36 61.1
Sabra14G0121200 Salix brachista HOM05D000568 ORTHO05D000628 7.4e-07 57.4 92 54.3
Lsat_1_v5_gn_3_24160 Lactuca sativa HOM05D000568 ORTHO05D000628 9.6e-07 57.0 35 62.9
CBR_g5575 Chara braunii HOM05D000568 ORTHO05D005559 1.3e-06 56.6 61 41.0
HPP92_003544 Vanilla planifolia HOM05D000568 ORTHO05D000628 1.3e-06 56.6 33 69.7
AUR62000319 Chenopodium quinoa HOM05D000568 ORTHO05D000628 2.1e-06 55.8 70 37.1
Cfa005997 Carpinus fangiana HOM05D000568 ORTHO05D000628 3.7e-06 55.1 132 42.4
SHI16844 Sapria himalayana HOM05D000568 ORTHO05D000628 3.7e-06 55.1 51 45.1
Sed0003283 Sechium edule HOM05D000568 ORTHO05D000628 3.7e-06 55.1 90 56.7
FAN02G1058 Fragaria x ananassa HOM05D000568 ORTHO05D000628 4.8e-06 54.7 46 52.2
RcHm_v2.0_Chr7g0186621 Rosa chinensis HOM05D000529 ORTHO05D000628 4.8e-06 54.7 35 68.6
AUR62006665 Chenopodium quinoa HOM05D000568 ORTHO05D000628 6.2e-06 54.3 70 35.7
FAN20G2496 Fragaria x ananassa HOM05D000568 ORTHO05D000628 6.2e-06 54.3 132 42.4
Lalb_Chr07g0177621 Lupinus albus HOM05D000568 ORTHO05D000628 6.2e-06 54.3 40 52.5
CiPaw.08G099400 Carya illinoinensis HOM05D000568 ORTHO05D000628 8.2e-06 53.9 132 41.7
Haze_04844 Corylus avellana HOM05D000568 ORTHO05D000628 8.2e-06 53.9 132 41.7
PSO210G7315 Papaver somniferum HOM05D000568 ORTHO05D000628 8.2e-06 53.9 38 55.3
PSO832G1473 Papaver somniferum HOM05D000568 ORTHO05D000628 8.2e-06 53.9 38 55.3


User provided reference genes

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