Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 3.1e-93 345.1 173 100.0
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 4.6e-81 304.7 176 87.5
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.4e-77 293.1 176 85.8
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 2.4e-77 292.4 174 85.1
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 9.6e-71 270.4 173 78.0
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.3e-70 270.0 173 78.0
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 1.5e-68 263.1 175 78.3
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 1.5e-68 263.1 172 76.7
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 1.5e-68 263.1 172 76.7
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 5.8e-68 261.2 176 76.1
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.1e-66 256.9 286 53.5
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.1e-66 256.9 286 53.5
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 6.0e-65 251.1 179 73.2
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 6.0e-65 251.1 179 73.2
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 6.0e-65 251.1 173 72.3
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 1.0e-64 250.4 176 73.3
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.8e-64 249.6 176 73.9
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 2.3e-64 249.2 181 72.4
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 2.3e-64 249.2 176 76.1
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 5.1e-64 248.1 180 70.6
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 5.1e-64 248.1 173 72.3
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 5.1e-64 248.1 173 72.3
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 5.1e-64 248.1 181 74.0
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 5.1e-64 248.1 182 72.0
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.5e-63 246.5 177 74.6
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.9e-63 246.1 174 73.6
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.5e-63 245.7 173 71.7
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 4.3e-63 245.0 177 74.0
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 5.6e-63 244.6 164 74.4
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 7.4e-63 244.2 176 72.2
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 1.3e-62 243.4 167 71.3
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 1.3e-62 243.4 179 72.6
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 1.6e-62 243.0 173 71.7
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 2.1e-62 242.7 173 72.3
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 3.7e-62 241.9 171 70.2
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 4.8e-62 241.5 176 72.7
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 6.2e-62 241.1 180 70.0
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 1.1e-61 240.4 168 73.8
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 1.1e-61 240.4 168 73.8
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 3.1e-61 238.8 168 73.2
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 3.1e-61 238.8 168 73.2
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 4.0e-61 238.4 177 71.2
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 5.3e-61 238.0 178 69.7
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 5.3e-61 238.0 164 73.8
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 9.0e-61 237.3 164 73.8
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 9.0e-61 237.3 173 71.1
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 2.0e-60 236.1 173 69.4
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 4.5e-60 235.0 166 72.3
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 4.5e-60 235.0 178 70.8
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.5e-60 235.0 170 71.8
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 7.6e-60 234.2 171 69.6
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 7.6e-60 234.2 171 69.6
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 7.6e-60 234.2 171 69.6
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 7.6e-60 234.2 176 71.0
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 1.3e-59 233.4 165 72.7
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 2.9e-59 232.3 181 69.6
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 2.9e-59 232.3 181 69.6
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 3.8e-59 231.9 183 69.4
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 3.8e-59 231.9 184 69.0
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 3.8e-59 231.9 184 67.9
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.8e-59 231.9 179 69.3
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 4.9e-59 231.5 181 69.6
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 4.9e-59 231.5 168 71.4
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 6.5e-59 231.1 179 68.2
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 8.4e-59 230.7 181 69.1
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 8.4e-59 230.7 188 66.0
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.4e-58 229.9 169 71.0
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 2.5e-58 229.2 185 67.0
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 3.2e-58 228.8 177 70.6
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 4.2e-58 228.4 179 69.3
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 1.2e-57 226.9 175 67.4
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.6e-57 226.5 182 69.2
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 3.5e-57 225.3 175 66.9
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 3.5e-57 225.3 175 66.9
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 6.0e-57 224.6 146 77.4
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 1.3e-56 223.4 181 66.3
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 1.3e-56 223.4 178 66.3
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 1.3e-56 223.4 174 66.7
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.8e-56 223.0 180 65.0
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.8e-56 223.0 182 67.6
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 2.3e-56 222.6 176 65.3
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.3e-56 222.6 214 58.9
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 3.0e-56 222.2 175 68.0
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 3.9e-56 221.9 178 67.4
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 5.1e-56 221.5 178 69.1
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 8.7e-56 220.7 181 69.1
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 1.1e-55 220.3 176 65.9
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 1.5e-55 219.9 179 64.8
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.9e-55 219.5 177 67.8
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 5.7e-55 218.0 185 64.9
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 7.4e-55 217.6 180 66.7
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 9.6e-55 217.2 180 66.1
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 2.1e-54 216.1 180 63.3
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 5.3e-53 211.5 151 72.2
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 5.3e-53 211.5 174 63.8
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 9.0e-53 210.7 180 63.9
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.2e-52 210.3 181 65.7
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.2e-52 210.3 137 74.5
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 2.0e-52 209.5 126 79.4
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 2.6e-52 209.1 142 71.8
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.4e-52 208.8 188 63.8
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 4.5e-52 208.4 182 62.6
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 1.7e-51 206.5 150 73.3
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 3.8e-51 205.3 184 65.8
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 6.5e-51 204.5 183 62.3
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 1.1e-50 203.8 195 59.0
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 3.2e-50 202.2 184 65.8
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 4.2e-50 201.8 173 65.3
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 4.2e-50 201.8 124 79.0
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 7.1e-50 201.1 154 67.5
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.2e-49 200.3 180 61.1
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 3.0e-48 195.7 142 71.1
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 3.3e-47 192.2 179 61.5
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 1.3e-46 190.3 190 59.5
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.4e-45 186.0 181 57.5
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 4.1e-45 185.3 177 59.3
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 6.9e-45 184.5 140 65.7
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 5.9e-44 181.4 143 67.1
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.1e-42 177.2 182 57.7
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.2e-42 175.6 162 58.0
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 5.5e-42 174.9 149 61.1
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 9.4e-42 174.1 121 71.9
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 9.7e-39 164.1 214 51.9
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 3.7e-38 162.2 120 65.0
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 4.5e-36 155.2 129 62.0
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 8.5e-35 151.0 155 55.5
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 1.1e-34 150.6 82 93.9
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 9.4e-34 147.5 87 83.9
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.9e-33 144.4 87 82.8
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 5.1e-32 141.7 87 79.3
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 6.7e-32 141.4 82 85.4
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 8.2e-30 134.4 109 56.9
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 7.7e-28 127.9 99 60.6
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 5.0e-27 125.2 82 79.3
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 2.1e-25 119.8 87 73.6
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.5e-23 113.6 103 54.4
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.4e-21 107.1 78 67.9
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 1.1e-18 97.4 82 63.4
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.9e-18 96.7 102 54.9
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 2.5e-18 96.3 91 56.0
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 6.8e-16 88.2 54 77.8
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 2.0e-15 86.7 91 57.1
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-14 83.6 54 77.8
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 4.8e-14 82.0 93 52.7
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 6.3e-14 81.6 93 51.6
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 7.0e-13 78.2 93 51.6
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 1.2e-09 67.4 63 47.6
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 2.2e-06 56.6 64 51.6


User provided reference genes

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